Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1016 ATGGGAATAATCATCGGTTCGATTTTCTGGCTTCTGGGTCTGTTGTTACTTCTTCTGGCTTTCCTAGAGATTTCTTCTGCTGCTCTTTCTCCTTCTGGGGTAAACTATGAAGTTGTTGCTCTGATTGCCATAAAGAATGACTTGCTTGATCCCCACAATGTTTTGGATAGTTGGGATATTAATTCTGTCGACCCCTGTAGCTGGAGGATGGTTACTTGTTCTCCAGATGGCTACGTGTCTGCTTTAGGATTGCCTAGTCAGAACTTGTCTGGTACACTGTCTCCTGGAATCCAAAACCTAACAAACTTGCAGTCTGTGTTGCTTCAAAACAATGGCATTTCTGGTTCAATTCCTGCTGGGATAGGAAATCTGGAAAAGCTTCAGACACTTGATCTTTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGGCTAGAGAACCTGAATTATCTGCGGTTAAACAATAACAGCTTGACAGGAGTCTGCCCTCAGTCCCTTGGCAACATTGAAGGCCTAACCCTTGTGGACCTCTCTTATAACAATCTGAGTGGTCCGTTGCCAAGAATATCTGCAAGAACATTCAAGATTGTGGGTAACCCTTTGATTTGTGGTCCAACTGCTAATAACTGTTCTACGGTTTTGCCGGAGCCCCTTTCCTTCCCTCCAGATGCTATGAAAGCCCAATCAGAATCTGTAACAAAAAGCCAACGTGTGGCAATTGCTTTTGGAGCAAGTTTTGGTGGTGCTTTTGTTGTCGTGATTATTATCGGGTTCCTTGTTTGGTGGCGGTATAGACTCAACCAGCAGATATTCTTTGATGTTAATGAGCAATATGATCCAGAGGTGCGCCTTGGTCATTTGAAAAGATACTCATTCAAAGAACTTCGAGCTGCAACAGACCATTTCAGTTCAAAGAACATTCTAGGAAGAGGTGGCTTTGGAATAGTCTACAAAGGGCGCTTGAATGATGGATCTATAGTGGCAGTGAAAAGGTTAAAGGACTATAATGCTGCCGCTGGAGAAATCCAATTTCAGACCGAAGTTGAGACAATAAGTTTAGCCGTCCACCGGAATCTTCTCAGGCTTTGTGGGTTTTGCAGCACTCAGAATGAAAGGCTCCTTGTTTATCCATACATGCCGAATGGCAGCGTAGCCTCTCGATTAAAAGATCATATTCGTGGTGAGCCGGCTTTAGATTGGGTGCGGCGAAAGAGAATAGCTTTAGGTACAGCAAGAGGGTTGGTTTACTTGCATGAGCAATGTGATCCTAAGATAATACACCGAGATGTGAAAGCCGCCAACATATTGCTGGATGAAGACTTTGAAGCAGTAGTTGGTGATTTTGGTTTGGCAAAGCTTCTGGAGCATAGAGAGTCGCATGTTACCACGGCAGTGCGTGGCACGGTTGGTCACATAGCTCCGGAATACTTGTGTACAGGTCAGTCATCGGATAAGACGGATGTGTTTGGGTTTGGAATCTTGCTTCTTGAGCTCATCACAGGTCACAAGGCCTTGGATTTTGGACGAGCTACTAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAATCTCCATCAAGAACAAAGATTAACTCAAATGGTGGATAAGGATTTGAATGGAGACTTTGACTTGATTGAACTGGAAGAAATGGTTCAGGTTGCACTATTGTGTACACAGTTTAATCCTCATCAACGTCCCAAGATGTCTGAAGTATTGAAGATGTTGGAAGGAGATGGTTTAGCAGAGAGATGGGAGGTTTCACAGAAGCTTGATACATCAAAGTTGCAGTGCAGTGAAAACCCTACTCCTCAGAGATATTCAGATTTTATAGAAGATTCTTCACTCATAGTAGAAGCTATGGAGCTTTCTGGGCCTAGGTGA 1890 0.436 MGIIIGSIFWLLGLLLLLLAFLEISSAALSPSGVNYEVVALIAIKNDLLDPHNVLDSWDINSVDPCSWRMVTCSPDGYVSALGLPSQNLSGTLSPGIQNLTNLQSVLLQNNGISGSIPAGIGNLEKLQTLDLSNNAFSGEIPSSLGGLENLNYLRLNNNSLTGVCPQSLGNIEGLTLVDLSYNNLSGPLPRISARTFKIVGNPLICGPTANNCSTVLPEPLSFPPDAMKAQSESVTKSQRVAIAFGASFGGAFVVVIIIGFLVWWRYRLNQQIFFDVNEQYDPEVRLGHLKRYSFKELRAATDHFSSKNILGRGGFGIVYKGRLNDGSIVAVKRLKDYNAAAGEIQFQTEVETISLAVHRNLLRLCGFCSTQNERLLVYPYMPNGSVASRLKDHIRGEPALDWVRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLEHRESHVTTAVRGTVGHIAPEYLCTGQSSDKTDVFGFGILLLELITGHKALDFGRATNQKGVMLDWVKNLHQEQRLTQMVDKDLNGDFDLIELEEMVQVALLCTQFNPHQRPKMSEVLKMLEGDGLAERWEVSQKLDTSKLQCSENPTPQRYSDFIEDSSLIVEAMELSGPR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1016 629 FunFam Somatic embryogenesis receptor-like kinase 1 382 598 - -
Lele49g1016 629 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 588 - -
Lele49g1016 629 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Lele49g1016 629 Gene3D Transferase(Phosphotransferase) domain 1 382 598 - -
Lele49g1016 629 Pfam Leucine rich repeat 101 161 IPR001611 GO:0005515
Lele49g1016 629 Gene3D Ribonuclease Inhibitor 34 215 IPR032675 -
Lele49g1016 629 FunFam Putative LRR receptor-like serine/threonine-protein kinase 34 215 - -
Lele49g1016 629 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Lele49g1016 629 FunFam Somatic embryogenesis receptor kinase 1 274 381 - -
Lele49g1016 629 SMART serkin_6 305 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele49g1016 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Lele49g1016 629 Gene3D Phosphorylase Kinase; domain 1 274 381 - -
Lele49g1016 629 ProSiteProfiles Protein kinase domain profile. 305 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele49g1016 629 Pfam Protein kinase domain 306 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele49g1016 629 SMART LRR_typ_2 148 171 IPR003591 -
Lele49g1016 629 SMART LRR_typ_2 100 123 IPR003591 -
Lele49g1016 629 SMART LRR_typ_2 124 147 IPR003591 -
Lele49g1016 629 SUPERFAMILY Protein kinase-like (PK-like) 282 579 IPR011009 -
Lele49g1016 629 SUPERFAMILY L domain-like 35 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1016 Lele-ChrLele49 6499693 6503165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g1016 70 629 Receptor kinase-like Gene Family AT1G60800 75.220 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele49g1016 Pkinase 9.7e-45 CL0016