Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0977 ATGGCGAGGGAGAGGATTCAGATTAAGAAGATCGACAACGCTACCGCAAGGCAAGTGACGTTCTCCAAGCGACGCAGGGGGCTTTTCAAAAAAGCTGAGGAGCTTTCTGTCCTCTGTGATGCAGATGTTGGCCTCATAGTCTTCTCCGCAACTGGGAAGCTCTTTGAGTACTCGAGCACAAGCATGAAGGAAATACTCAACAGGTATCATTTGCACTCGAAGAACCTATCGAAACAAGAACAACCGTCTGTTGAATTTCAGGTAGTTGAGAACAGTAATTACACCAGTTTGAGTAAGGAAGTTGCTGAGAAGAGCCGTCAACTAAGGCGGATGAGAGGAGAAGATCTGCAAGGTTTAAATATCGAGGAATTGCAGCAACTAGAGAGGTCTCTCGAATCTGGATTGGGCCGTGTGATAGAAAAGAAGGAAGAGAAGATAATGACTGAGATCAGTGATCTTGAGAGAAAGGGAGTGGAGTTGATGGAAGAGAATGAGATGTTAAAGCTTCAAGTGGAACAATTATCTGATGGCAATAGGCATGGTGGTACCGAGTCCGAAATCGTCAACAATGAGGGTCAGTCATCAGAATCTGTCACTATCGTCTGCAACTCCCCGGGACCCCCTCAAGACTACGATAGCTCAGACACATCGCTCAAGCTGGGGTTACCATATGGTGGCTGA 681 0.4655 MARERIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSATGKLFEYSSTSMKEILNRYHLHSKNLSKQEQPSVEFQVVENSNYTSLSKEVAEKSRQLRRMRGEDLQGLNIEELQQLERSLESGLGRVIEKKEEKIMTEISDLERKGVELMEENEMLKLQVEQLSDGNRHGGTESEIVNNEGQSSESVTIVCNSPGPPQDYDSSDTSLKLGLPYGG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0977 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele49g0977 226 Coils Coil 94 114 - -
Lele49g0977 226 MobiDBLite consensus disorder prediction 176 226 - -
Lele49g0977 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Lele49g0977 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele49g0977 226 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele49g0977 226 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele49g0977 226 Coils Coil 150 170 - -
Lele49g0977 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele49g0977 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele49g0977 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele49g0977 226 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Lele49g0977 226 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Lele49g0977 226 FunFam Transcription factor, MADS-box 13 83 - -
Lele49g0977 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele49g0977 226 MobiDBLite consensus disorder prediction 176 216 - -
Lele49g0977 226 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lele49g0977 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0977 Lele-ChrLele49 6156921 6161051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0977 1 226 MADS-box Gene Family AT2G22540 65.417 5.20e-108 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele49g0977 K-box 2.4e-17 No_clan