Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0957 ATGTATAAGTTCCAACAGAATTTAGTGACAAAAGGGAAAGAAACTTGGTCAGTTTTGTCTTTCATCATCTCTATAAGTTGTTTGCATGCTGATTTTGATATTTTGGTGAAAGATGAAGAAAATGGTTGCTCTGAAGGTTCCACTTCAATTAGAAGAGCTTTGCTAAAGAATAACCTCGTCACACAAGCGTCATCTTCTTCTTCTGCTGCTGCTGTGAAGCTGCATGAAATTCACAACAACCAAGTTGTGATAGATAATGGAATCGTCCGAGTCACGTTGTCCAGACCAGAAGGCTACGTCCTTGCAATATCTTATAATGGAATTGACAATGTCCTCGAAGCTCAAAACCAAAATCATAATCGAGGGTATCTTGACGTTGTTTGGAAAAATGGAAATTTTCAGAAGATCGAGGGGACGAAGTTCTCAGTTATAGAAATGACGGAAGATCAAGTGGAAGTTTCATTTTTACGAGAATGGTCATCTGCCATGAAAGGATCTGTGCCTATAAAAATAGACATGAGGTACGACGAAATTAATGAACTTAAACATCGTTTTAGGTATATAATGCGAAGAGGCGACTCAGGATATTACTCGTACGCGATATTTGAGAGGCCAGAAGGATTTCCAGCGGCGCAGGTTCATCAGATTAGGCTTGTTTATAAGCTCCGACAAGACAAGTTCCAGTATATGGCAATATCAAGGAGGAGGCAAAGAGTGATGCCAACGGCTGATGATAGAAGCAATGGACAGAAACTTGCTTATCCTGAAGCGGTGCTCTTGACCAGTGCCAAGAACCCCAGAATTAGAGGAGAGGTGGATGATAAATACCAGTACTCGGCGGAGAACAAAGACAACTGTGTTCATGGATGGATTAGCTTTGATGCTGAACCACACACCGGCTTCTGGGTTATTGCTCCAACTAATGAGTTTCGTAATGCTGGGCCCCACAAGCAGGATCTCACTTCTCATGTTGGCCCCACCTCCCTTGCTATGTTTGTGAGCACTCACTACGCTGGGACGAGCGTGTCGATTGATTTTGAAGAAGGGGAGACATACAAGAAGGTGTTTGGCCCTATATTTGTCTATCTCAACTCTGCTCCAAGCAACGCCAATTTAGATGCTCTCTGGTCAGATGCTGTTCGACAGTTCAATGAGGAAGTCAGAAGCTGGCCCTATGATTTCCCTCGATCTCCAGATTTCATTCTACCCAATCAACGAGGATCACTAAATGGACAATTAAAAGTCCGAGATTGGTTCAACAAGGGATGGGGAATCTTAAACGGTAAGTTTGCTTATGTTGGTCTAGCTCTTCCTGGAGAAAATGGATCCTGGCAGAGAGAGAGCAAGGGTTATCAATTCTGGACTCAAGCAGATGAGAATGGTTACTTTGAAATCAAATACGTAATACCTGGGGATTATAATCTGTATGCTTGGGTTCCTGGCTTTATCGGTGATTACAGATATAATGCTACAATCACCATCAAACCAGGAGGTGTCGTTAAAATGGGTTCACTTGTATATAGTCCTCCAAGAAATGGTCCAACCATATGGGAAATTGGAGTCCCAGATCGCTCAGCCGGAGAGTTGTACATACCAGACCCGGACCCTCAGCTCGTCAACAGATTGTACCAGAATGATACAAGAAACAAGTTTAGACAATATGGGTTGTGGGAACGTTACACTGACTTATATCCAGAGAAAGATCTAGTTTATAACGTTGGCGTCGATAAGCATCACCAGAATTGGTTTTTTGCTCATGTTGCCAGAAGGACAGGAAATCAGACATACCAACCAACAACATGGCAGATCAAATTTGAACTTGAAGATGATGACACGTCGTCATCATCATCAGGAAACTACACTCTTCGAGTGGCCTTGGCATCAGCAAATGAAGCTAAGTTGCAGGTTTGGTTCAATGATGCGAGCGATGTTAATCCGCACTATGAGACAGCGAGGATGGGAAAAGACAATGCAATAGCGAGGCATGGCATTCACGGATTGTATAGTTTGATAAGTATCGAGGTAGCGAGTGGTCGATTTAAAAAGGGAAACAATATGATATATCTGAAGCAATCAGAAGCCTCAGACTCATTTCAAGGTGTTTTGTATGATTATCTCCGTTTAGAAAGACATCCAACTGCTGCAAGGATGTGA 2154 0.4257 MYKFQQNLVTKGKETWSVLSFIISISCLHADFDILVKDEENGCSEGSTSIRRALLKNNLVTQASSSSSAAAVKLHEIHNNQVVIDNGIVRVTLSRPEGYVLAISYNGIDNVLEAQNQNHNRGYLDVVWKNGNFQKIEGTKFSVIEMTEDQVEVSFLREWSSAMKGSVPIKIDMRYDEINELKHRFRYIMRRGDSGYYSYAIFERPEGFPAAQVHQIRLVYKLRQDKFQYMAISRRRQRVMPTADDRSNGQKLAYPEAVLLTSAKNPRIRGEVDDKYQYSAENKDNCVHGWISFDAEPHTGFWVIAPTNEFRNAGPHKQDLTSHVGPTSLAMFVSTHYAGTSVSIDFEEGETYKKVFGPIFVYLNSAPSNANLDALWSDAVRQFNEEVRSWPYDFPRSPDFILPNQRGSLNGQLKVRDWFNKGWGILNGKFAYVGLALPGENGSWQRESKGYQFWTQADENGYFEIKYVIPGDYNLYAWVPGFIGDYRYNATITIKPGGVVKMGSLVYSPPRNGPTIWEIGVPDRSAGELYIPDPDPQLVNRLYQNDTRNKFRQYGLWERYTDLYPEKDLVYNVGVDKHHQNWFFAHVARRTGNQTYQPTTWQIKFELEDDDTSSSSSGNYTLRVALASANEAKLQVWFNDASDVNPHYETARMGKDNAIARHGIHGLYSLISIEVASGRFKKGNNMIYLKQSEASDSFQGVLYDYLRLERHPTAARM 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0957 717 Gene3D - 512 709 - -
Lele49g0957 717 Pfam Polysaccharide lyase family 4, domain II 429 498 IPR029413 -
Lele49g0957 717 Pfam Polysaccharide lyase family 4, domain III 515 708 IPR029411 -
Lele49g0957 717 Gene3D - 404 503 - -
Lele49g0957 717 CDD RGL4_C 517 709 - -
Lele49g0957 717 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 74 711 - -
Lele49g0957 717 CDD RGL4_M 405 505 IPR029413 -
Lele49g0957 717 Gene3D - 75 381 IPR014718 GO:0030246
Lele49g0957 717 CDD RGL4_N 78 370 - -
Lele49g0957 717 FunFam Rhamnogalacturonate lyase B 403 502 - -
Lele49g0957 717 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Lele49g0957 717 SUPERFAMILY Galactose-binding domain-like 512 709 IPR008979 -
Lele49g0957 717 SUPERFAMILY Starch-binding domain-like 449 502 IPR013784 GO:0030246
Lele49g0957 717 Pfam Rhamnogalacturonate lyase family 61 272 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0957 Lele-ChrLele49 6028477 6035184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0957 68 713 Polysaccharide Lyase AT1G09910 51.455 0.0 674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0957 49 6028477 6035184 Lele51g0972 51 6137466 6145155 hybridization