Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0940 ATGGAGCTCACTCAACTCGGTTTTCTGGAGGAGCTTCTAGCTCCAAGAAGAGACACTTGGAGCACTTTTTCCTCTGGTTTGGGCGAGATATTCCCCAATGATTGGAGTTTTAATTCTTTTGAAGATAACCCACCTTTAGCTCCTTTGAATCCTCCATTACCTCCATTTTCCACGCCACTAGACCATAGATTTGAGTGTCCTTACACTAATGAAGCAGCAGCATACCCATTTGTTGATGGCTTCACAGCACCGGAGATTGACTCTTCATACGCCAGGAATGACGATTCTGCACTGTTTCTTGCACAAGAAAGTAACCCATCAATGGAGGATGAAGAGTTTGGCTTTATGGGTAGTGAAAATCAGAGCCTTGAAGATATGAACACTGTCTGCAAAATTGAGGAACAGGCCACAGAAACAGAAGTTCCAGTAGTCTTCAACATGTGTGGGGAGAAAAAACCTAAGTCCAAGAAGCTTGAAGGGCAGCCCTCCAAGAATCTAATGGCAGAAAGGAGGAGAAGAAAGCGCCTCAATGACCGCCTCTCCATGCTAAGGTCAATAGTTCCTAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGAGACACCATAGATTATATGAAAGAGCTTCTAGAAAGGATCGGTAAACTGCAAGAGGAAAGAACTGAAGAGGGTGTAAATCAGATAAACCTCTTGGGTAAATCCAAAGAGATGAAACCAAATGAAGTGATGGTAAGAAATTCACCCAAGTTTGAAGTAGAGAAGAGAGACCAGGACACAAGAGTCAGTATCTGTTGTGGCACAAGGGCTGGATTGTTGCTGTCAACAGTGAACACCCTTGAAGCATTAGGCCTTGAGATTCAACAGTGTGTTATAAGCAGCTTCCATGATTTTTCAATGCAAGCATCTTGCTCAGAGGTAGCCGAGCAGAGAACTGGTATTAGCTCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCCGGTTATGGTGGGAGATGTCCATAG 1002 0.4381 MELTQLGFLEELLAPRRDTWSTFSSGLGEIFPNDWSFNSFEDNPPLAPLNPPLPPFSTPLDHRFECPYTNEAAAYPFVDGFTAPEIDSSYARNDDSALFLAQESNPSMEDEEFGFMGSENQSLEDMNTVCKIEEQATETEVPVVFNMCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEERTEEGVNQINLLGKSKEMKPNEVMVRNSPKFEVEKRDQDTRVSICCGTRAGLLLSTVNTLEALGLEIQQCVISSFHDFSMQASCSEVAEQRTGISSEEIKQALFRNAGYGGRCP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0940 333 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
Lele49g0940 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 76 327 - -
Lele49g0940 333 SMART finulus 166 215 IPR011598 GO:0046983
Lele49g0940 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Lele49g0940 333 Gene3D - 149 210 IPR036638 GO:0046983
Lele49g0940 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 222 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0940 Lele-ChrLele49 5914335 5915588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0940 151 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.681 1.79e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele49g0940 HLH 7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0940 49 5914335 5915588 Lele51g0954 51 6015090 6016349 hybridization
Lele49g0940 49 5914335 5915588 Lele52g0976 52 6414881 6416192 hybridization