Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0935 ATGTCAGATTGTTCATCATCAGTTGACAGTTCTAGTGTCCCGAACATGTCAGATGAGAAAAGGGACAACATGAATTTGAAGGCTACAGAGTTGAGGTTGGGTCTTCCTGGATCCCAGTCTCCGGAAAGGGATTCAGATCTTTATGCATCAAACTTAATAAAGCTTGATGAGAAACCACTATTTCCTTTGCTTCCTACAAGAGATGGAATCTGTTCATCATCTCAGAAAACTGTGGTTTCAGGAAACAAGAGAGGTTTCTCTGACACCATGGAGGGTTTCCCAGAGGGGAATTTTACTGGTAATTCAGGGATAAATGTTATGTTACCTAGATCTTCTGGAGCTCAGCCAACCTTTATGAAAGAAATACCTGCTAAACTTTCACAGGAACGGCCTTCTGCAAGCAATGGACTTAGTCATAATCAGACGAGTACTCCTGCTAATGGCAGTGCGCCAGCTGCTAAAGCACAAGTTGTTGGTTGGCCCCCTATAAGATCATATAGGAAGAATTCATTGGCCAATACTTTAAAGAACAATGATGAAGTTGATGGAAAACCGGGTCCTGCTGCTCTCTTTGTGAAGGTTAGCATGGATGGTGCTCCTTATCTAAGGAAAGTAGATCTAAGGAATTCTTCAACATATCAAGAACTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGATTCTCATGGTGCTCCAGGCAGAGAAATGTTAAGTGAGAGCAAGTTGAGGGATCTTCTACATGGTTCTGAGTACGTTCTCACTTATGAAGATAAAGACGGGGATTGGATGCTTGTAGGGGATGTACCATGGGGGATGTTCATTGACACATGCAAGAGGCTCAAAATTATGAAGGGTTCAGATGCCATTGGCTTGGCTCCCAGAGCTATGGAAAAATCCAAGAGCAGGAGCTAA 930 0.4301 MSDCSSSVDSSSVPNMSDEKRDNMNLKATELRLGLPGSQSPERDSDLYASNLIKLDEKPLFPLLPTRDGICSSSQKTVVSGNKRGFSDTMEGFPEGNFTGNSGINVMLPRSSGAQPTFMKEIPAKLSQERPSASNGLSHNQTSTPANGSAPAAKAQVVGWPPIRSYRKNSLANTLKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNSSTYQELSSALEKMFSCFTLGQCDSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0935 309 MobiDBLite consensus disorder prediction 1 45 - -
Lele49g0935 309 ProSiteProfiles PB1 domain profile. 189 293 IPR000270 GO:0005515
Lele49g0935 309 MobiDBLite consensus disorder prediction 1 19 - -
Lele49g0935 309 MobiDBLite consensus disorder prediction 128 150 - -
Lele49g0935 309 MobiDBLite consensus disorder prediction 126 154 - -
Lele49g0935 309 SUPERFAMILY CAD & PB1 domains 187 290 - -
Lele49g0935 309 Gene3D - 186 303 - -
Lele49g0935 309 Pfam AUX/IAA family 29 300 IPR033389 -
Lele49g0935 309 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 296 IPR003311 GO:0005634|GO:0006355
Lele49g0935 309 FunFam Auxin-responsive protein 184 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0935 Lele-ChrLele49 5883310 5886380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0935 193 299 B3 DNA Binding Superfamily AT4G23980 30.841 1.19e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele49g0935 AUX_IAA 2.3e-89 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0935 49 5883310 5886380 Lele49g0935 49 5883310 5886380 ECH
Lele49g0935 49 5883310 5886380 Lele51g0951 51 5981934 5985116 hybridization
Lele49g0935 49 5883310 5886380 Lele52g0972 52 6375321 6378536 hybridization