Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0914 ATGGCTGCGCTTGGAAACCCAAAAACTTGGATTCCCTATGTGAACATCAGAGATTGCTCTCAAGGTTTTTGCAGTGTTTACTGTCCACAGTGGTGTTATATAGTTCCTACTCCTCCTCCTCCTCCTGCTCTTGATTTTCCTCAAGATGATGATTCATCTCCAAATTTCTCTCCTCTTGTTATAGCCATAATTGGGATCTTGGCCAGTGCTTTTCTTCTTGTAAGTTATTACACTTTCATATCCAAGTACTGTGGGAACGGAGCAGGACCATCTTCAGACAGAGAGAATCTACACCAGAATGATGAGATTATTGAAGATAATCACAACCCTTCTCTGTACGAGCCATGGCATGTTCAAACCAATGGATTAGATGAAGCTCTGATAAAGTCAATCACAGTGTGTAAGTATAAAAGAGGAGATGGATTGTTTGGTGTCACAGATTGCTCTGTTTGTCTCAGTGAGTTTCGAGAAGATGAAAATGTCAGATTATTGCCTAAATGCAGTCACGCTTTTCACCTTCCTTGTATCGATCAATGGCTCAAATCTCACTCTAATTGCCCTCTCTGTCGTGCTCTTATCTTCACCTTCAATTCTTCTTCCACCCCTCAAGTGGTTCCATTTCCACCTGTGATACAAGAAGAAGAATCTTCCTCAGTAAGTGAATCTTCTTCAAGGGAAATTCAGAATGCAAGTGAAGAAAACAGAGGGCTTGGGGATGTGGAAGAAGAAGAAGGTCGGAAGTCTGCGTTGCGTGCTTTTAGCGATCTGGGTTTTCTGCGAGGGAGGCAAAGAATGATGATTGAGATGATCAGAGATGAAAGGGATGAAGAAGACGAGGAAGCCATAAGAAGGTCGGTGTCGATGGATCATCATTCGCTGCAAATTGGAGTAGGATCAAACGAAGCAGGTACTTCAAAGAGATCATCACAAGGAGAAAGTAGCAAGTCAAGTAGTAGCAGAACAAGGGTTCTTCTTCATTGTGTGTTGAGTCCAATCACAATGAAGAGATCATTTTCCAGTGGAAGATTCTCGTTTCGCAGAAATGGCAGAGCAAGGCAGGGGATTATCGCCGCGTGA 1077 0.429 MAALGNPKTWIPYVNIRDCSQGFCSVYCPQWCYIVPTPPPPPALDFPQDDDSSPNFSPLVIAIIGILASAFLLVSYYTFISKYCGNGAGPSSDRENLHQNDEIIEDNHNPSLYEPWHVQTNGLDEALIKSITVCKYKRGDGLFGVTDCSVCLSEFREDENVRLLPKCSHAFHLPCIDQWLKSHSNCPLCRALIFTFNSSSTPQVVPFPPVIQEEESSSVSESSSREIQNASEENRGLGDVEEEEGRKSALRAFSDLGFLRGRQRMMIEMIRDERDEEDEEAIRRSVSMDHHSLQIGVGSNEAGTSKRSSQGESSKSSSSRTRVLLHCVLSPITMKRSFSSGRFSFRRNGRARQGIIAA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0914 358 CDD RING-H2_PA-TM-RING 147 190 - -
Lele49g0914 358 MobiDBLite consensus disorder prediction 211 246 - -
Lele49g0914 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 196 IPR013083 -
Lele49g0914 358 FunFam RING-H2 finger protein ATL54 123 196 - -
Lele49g0914 358 PANTHER RING-H2 FINGER PROTEIN ATL16 44 322 IPR044600 GO:0016567|GO:0016740
Lele49g0914 358 MobiDBLite consensus disorder prediction 271 287 - -
Lele49g0914 358 SUPERFAMILY RING/U-box 147 196 - -
Lele49g0914 358 Pfam Ring finger domain 147 190 IPR001841 -
Lele49g0914 358 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Lele49g0914 358 MobiDBLite consensus disorder prediction 213 231 - -
Lele49g0914 358 MobiDBLite consensus disorder prediction 292 320 - -
Lele49g0914 358 MobiDBLite consensus disorder prediction 271 320 - -
Lele49g0914 358 SMART ring_2 148 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0914 Lele-ChrLele49 5711738 5712814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0914 6 353 C3H Transcription Factor Family AT5G17600 41.192 5.92e-70 221