Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0908 ATGGGGAAGAAGAAACCCAAGGATCCCCAGGAAACCCCTACAAGCAACGGTGCTTCCGACATATTTAGCAAGCTATTTGGTAATTTATCGGAACAGGGCGCCAGCTCTTCTCTATTCTCAGATAGCAACCCCTTTTGGAAGAAGCCTCTTGAAACTGGTTCAAGTTTCGGCCTAACCAATAATACCGAAAACGCTGGTAGCGCCGTCTCCGATAGCCCCGATTCTGAAGTGCTGAAGAAGAGGAAGAAAAGGAAAGAAAGGAACTCGTCTATTGATTCGGATATTGCCATTGAAGCTTCGGGGAAGAAGTCGAAATCTGGTTCCGACTTGAACGCTCATATGATTCCCCAATCGAATAGCACAGCGCAGGATGACGAGGCGACTGCATTGTCGAAGAAGGAAAATATTGTGTCTAAGGAATGCGAGGAGCGAGGTGAGCTTGTGGATGACGACAAGGAGAAGAGGAAGAAGAACAAGAGAAAAAGGGTTGACGTTGAGAAAGAGTGGGAAATGAAGAGGTATGCGGCAGTGCAGGAAGAGCAAGATGACGGGGAAGGCTTGGAGAAAATTGTTGTTGGGACCAAGAGGAAGACGGTGGATAATCCTGCCGACATGTTGGTAACGAATGAAGGTTTTGATGATGAGAAAAAGCTCTTGAGAACCATATTTGTGGGGAATTTACCGCTCAAGGTGAAAAAGAAGACTTTATTGGCGGAGTTTAAGAAATTTGGGGAGGTTGAATCTGTGAGGATTCGTTCTGTTCCAATATTAGATACCAAAAAACCCAGAAAGGGAGCTATCCTTTCGAAGAAAATCAATGATGCTGGTGATAGTGTTCATGCATACATTGTTTTCAAGACAGAGCAGTCAGCTCAGGATTCTTTGTTCCATAACATGGCCATGGTTGGAGGAAATCACATTCGCGTTGATAGAGCATGCCCACCTCGAAAAAAACTTAAAGGAGAGCATACTCAGCTGTATGATAACAAGAGAACTGTTTTTGTTGGCAACCTCCCATTTGATGTAAAGGATGAAGAACTATATAAACTATTTTCTGGGATGTCCAACCTGGAATCCAGCATAGAAGCAGTTAGAGTCATTAGAGATCCTCATTTGAATATTGGGAAGGGTATCGCCTATATGCTGTTTAAAACAAGGGAAGCTGCTAATTTTGTTGCTAGGAAACGGAACTTGAAGCTTCGAGACCGAGAGCTGAGACTCTGTCATGCAAAAGCGGATGCCACCCCATCCAAAAGGCCGAACTTGTCACCATCACGAGCTTCTGGTACTCCTGCGAAGAAGGCAGCCATGGCTTCAAGGTCTCCTTCAAGCAGTGATAACAGGACAAACAAAAAATCCAATATGTCTTACCAAGGTTTGCGGGCAAACAAAACTGTTGCCCACAAGAAATCAGGAATCCGTGGAGGGGAGCGAACGACGGAGCGCAAGACGAAACGACCATCAGTTGCAGCCAGAAAGGGTAAACTAAAAGCAAAATTGCCAAAAGAAGACGGTTCATCAAAACAAGCAGGAACGAAACGCAAGCTGGATAGTCGAACTCCAGACAGCTCTCTACGAAAGAAGAAATTTAAGAATAGGTAG 1602 0.4476 MGKKKPKDPQETPTSNGASDIFSKLFGNLSEQGASSSLFSDSNPFWKKPLETGSSFGLTNNTENAGSAVSDSPDSEVLKKRKKRKERNSSIDSDIAIEASGKKSKSGSDLNAHMIPQSNSTAQDDEATALSKKENIVSKECEERGELVDDDKEKRKKNKRKRVDVEKEWEMKRYAAVQEEQDDGEGLEKIVVGTKRKTVDNPADMLVTNEGFDDEKKLLRTIFVGNLPLKVKKKTLLAEFKKFGEVESVRIRSVPILDTKKPRKGAILSKKINDAGDSVHAYIVFKTEQSAQDSLFHNMAMVGGNHIRVDRACPPRKKLKGEHTQLYDNKRTVFVGNLPFDVKDEELYKLFSGMSNLESSIEAVRVIRDPHLNIGKGIAYMLFKTREAANFVARKRNLKLRDRELRLCHAKADATPSKRPNLSPSRASGTPAKKAAMASRSPSSSDNRTNKKSNMSYQGLRANKTVAHKKSGIRGGERTTERKTKRPSVAARKGKLKAKLPKEDGSSKQAGTKRKLDSRTPDSSLRKKKFKNR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0908 533 CDD RRM1_RBM34 220 310 IPR034220 -
Lele49g0908 533 SUPERFAMILY RNA-binding domain, RBD 215 321 IPR035979 GO:0003676
Lele49g0908 533 MobiDBLite consensus disorder prediction 409 533 - -
Lele49g0908 533 MobiDBLite consensus disorder prediction 141 160 - -
Lele49g0908 533 MobiDBLite consensus disorder prediction 49 71 - -
Lele49g0908 533 MobiDBLite consensus disorder prediction 49 134 - -
Lele49g0908 533 MobiDBLite consensus disorder prediction 1 20 - -
Lele49g0908 533 Gene3D - 323 430 IPR012677 -
Lele49g0908 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 314 IPR000504 GO:0003723
Lele49g0908 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 333 405 IPR000504 GO:0003723
Lele49g0908 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 264 IPR000504 GO:0003723
Lele49g0908 533 SMART rrm1_1 221 310 IPR000504 GO:0003723
Lele49g0908 533 SMART rrm1_1 332 408 IPR000504 GO:0003723
Lele49g0908 533 MobiDBLite consensus disorder prediction 104 126 - -
Lele49g0908 533 MobiDBLite consensus disorder prediction 470 487 - -
Lele49g0908 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 331 412 IPR000504 GO:0003723
Lele49g0908 533 CDD RRM2_RBM34 332 407 IPR034221 -
Lele49g0908 533 Gene3D - 126 322 IPR012677 -
Lele49g0908 533 MobiDBLite consensus disorder prediction 74 92 - -
Lele49g0908 533 MobiDBLite consensus disorder prediction 496 527 - -
Lele49g0908 533 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 311 520 - -
Lele49g0908 533 SUPERFAMILY RNA-binding domain, RBD 327 428 IPR035979 GO:0003676
Lele49g0908 533 MobiDBLite consensus disorder prediction 437 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0908 Lele-ChrLele49 5670529 5673461 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0908 49 5670529 5673461 Lele49g0908 49 5670529 5673461 ECH
Lele49g0908 49 5670529 5673461 Lele51g0924 51 5759661 5762598 hybridization
Lele49g0908 49 5670529 5673461 Lele52g0940 52 6113587 6116571 hybridization