Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0904 ATGTCCGACCGGAGTGCATTATCCAGCGTCGGCTCACCGGAGGAGGGAAAGAAGAAGAAGGAGAGAAAAGTCCCTCTGTTGAAGTTGTTCTCTTTCGCTGACTCCTATGACTATGTGCTCATGGCCGTTGGATCTGTCGGTGCATGTGTTCATGGCGCTTCTGTTCCTGTTTTCTTCATCTTCTTCGGCAAGTTGATCAATGTCATAGGCCTCGCTTACCTCTTTCCCCAACAAGCTTCTCACCAAGTTGCCAAGTATTCGTTGGATTTCGTGTATCTGAGTATAGTCATCTTGTTTTCGTCTTGGACAGAGGTGGCATGTTGGATGCACACTGGGGAAAGACAAACAGCGAAGATGAGAATGGCATATTTAAGATCAATGTTGAATCAAGACATAAGTTTATTTGATACAGAAGCTTCAACTGGGGAGGTTATTTCTGCCATTTCCAGCGAGATCCTCGTTGTTCAAGATGCACTCTCTGAGAAGGTATCATCATTTCGGTTTCGTGAATTAATTAATAGTAGTAGTGAAGGGATTCCTGAAACTCATAGTTTTGCATCGTTTTTATGGCAGGCGGGAAATTTCTTGCACTACATAAGCCGATTCGTAGCGGGATTTACCCTTGGGTTTGTCAGAATATGGCAGATCAGTCTAGTCACACTTTCGATTGTTCCCTTGATCGCCGTCGCCGGAGGTCTTTATGCCTACGTCACCGTCGGCCTTATTGCCCAAGTCCGAAAATCCTACGTTAGGGCTGGTGAAATCGCCGAAGAGGTGATAGGGAATGTCAGAACGGTTCAGGCATTTGCAGGAGAAGAGAGAGCGGTCAGATCATACAAAGCGGCTCTCGTGAATACTTATAACAATGGCCGGAAAGCAGGTTTAGCAAAGGGTCTTGGACTAGGCTCCATGCATTGTGTCCTGTTTCTGTCATGGGCACTGCTTGTTTGGTTCACTAGTGTTATCGTTCACAAGAAAATCGCCAATGGAGGCGACTCTTTTACTACCATGCTCAATGTTGTCATCTCTGGCCTGTCGCTAGGTCAGGCAGCACCAGATATATCTGCATTTATCCGAGCTAAGGCAGCAGCCTATCCCATTTTTGAGATGATCGAAAGGGAGACAGTGAGTAAAATCAACTCAAAAACTGGTCGAAAATCAAGTAAATTGGATGGTCACATCCAATTTAAAGATGTCTGTTTCAGTTATCCATCTCGTCCTGATATAGTTGTTTTCAACAAACTCTGTCTTGACATTCCACCTGCCAAAATTGTAGCCTTAGTAGGAGGAACTGGGTCAGGAAAGAGCACTATTATATCCCTGATTGAGCGCTTCTACGAACCACTTTCTGGACAAATACTATTAGATGGGAATGATATCCTGGAACTCGATCTTAAATGGCTAAGAAGTCAAATTGGGTTGGTTAATCAAGAACCTGCTCTTTTTACCACAAGCATCAGAGAAAATATACTGTACGGAAAAAATGATGCCACTGTTGAAGAACTTAATCATGCGGTGAAGCTTTCAGATGCTGAGTCTTTCATTAACAATCTTCCTGAAAGATTGGAAACTCAGGTTGGAGAGAGAGGAATACAACTTTCAGGTGGACAAAAACAAAGGATTGCTATATCTCGAGCCATTCTGAAGAACCCATCAATCCTTTTATTGGATGAAGCTACCAGTGCTCTGGATGCGGAATCTGAGAAGAGTGTACAGGAAGCTCTTGATCATGTCATGGTTGGTAGAACAACTATCATAGTGGCCCACAGACTTTCTACAATTAGGAATGCAGATATGATTGCTGTTGTTCAGGAAGGGAGAATTGTAGAAATTGGTAACCATGAGGAGCTCATTTCTAACCCAAATAGCACATATGCATCTCTCGTTCAACTGCAGGAGAAAGCTTCTTTGCAAAGCCACCAGCCAGAGGGTCCTACTAGTGTGGCACAAAGGTACTCAAGAGAATTGTCCTGTACAAGCCTTGGAAGCAGTTTTCGGTCAGATAAAGAATCTTTAGGCCGTGTTTGTGCTGATGAAGTGGAAAGTGTAGCCAAGTCAAGTCATGTTTCTGTGAAAAGACTGTATTCAATGATTGCACCTGACTGGTTTTATGGGGTTTCTGGCACCTTTTGTGCATTTATTGCTGGAGCTCAAATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTATCATACTATATGGACTGGGATACAACGCGTCATGAGGTTAAAAAAATCACTTTTCTATTCTGTGGGGCAGCAATAGTGACTATTACTGCCCATGCCATTGAGCATCTTTCTTTTGGAATCATGGGCGAGAGACTTACTCTTCGTGTGCGCGAAATGATATTTTCTGCTATTTTGAAAAATGAAATCGGCTGGTTTGATGATACCAACAACACAAGTTCAATGCTATCATCACGTTTAGAGATGGATGCAACTTTATTCCGAACTATAGTTGTTGATCGGTCTACAATTCTCTTACAGAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTCATGCTGAACTGGAGGATAACACTAGTTGTCTTGGCCACATACCCTTTGATCATTAGTGGTCACATCAGCGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCACAGCATATCTGAAAGCCAACATGCTGGCTGGGGAAGCCGTCAGTAACTTGCGTACTGTTGCTGCATTTTGTTCTGAAGAAAAGGTCCTAAAACTTTATGCTAATGAGCTTGTCGAGCCTTCTAAGCTTTCGTTTAAACGGGGACAAATTTCTGGCATATTCTATGGCATTTCACAGTTCTTCATTTTCTCTTCTTATGGCCTTGCCTTGTGGTATGGTTCTGTTTTGATGGAAAAGGAGCTGGTTAGCTTCAAATCCGTCATGAAGTCATTTATGGTTCTAATTGTAACTGCATTGGGCATGGGAGAGACGTTGGCACTGGCCCCAGATCTTTTGAAAGGGAACCAAATGGTTGCTTCAGTTTTTGAAGTGATGGATAGAAAGTCAGGAATGGTGGCTGATGCCGGAGAAGAGCTTAAGATGGTGGAGGGAACAATCGAGCTAAAAAAAATCCATTTTAGTTACCCCTCAAGGCCTGATGTAGTGATTTTTAAAGATTTTAATCTGAAAGTGCCTTCAGGCAGGAGTATTGCCTTAGTGGGACAAAGTGGTTCTGGTAAAAGCTCTGTCATCTCCCTTATACTCAGATTTTATGATCCATCGTCTGGGAGAGTGATGATTGATGGAAAAGACATTAGGAGACTCCATTTGAAGTCATTGAGGAAGCATATTGGTATTGTGCAACAAGAACCTGCGCTTTTTGCAACATCAATCTATGAAAACATTCTATATGGAAGGGAAGGAGCTTCTGACTCAGAGGTAATTGAAGCAGCTAAGCTTGCCAATGCTCACAGTTTCATCAGTTCTCTTCCGGATGGCTACACTACCAAAGTGGGCGAACGAGGCGTCCAACTCTCCGGCGGCCAGAGACAAAGGGTAGCCATAGCCAGAGCTGTTCTAAAGAACCCAGAAATCTTGCTACTAGATGAAGCCACTAGTGCACTTGATGTGGAATCTGAGAGTGTGGTGCAGCAAGCTCTGGACAGATTGATGCAGAACAGGACAACAGTTATGGTGGCACACAGGCTATCCACAATAAGGAATGCGAATCAAATCTCAGTTTTGCAGGACGGGAAGATAATAGAGCAAGGGACTCATTCAAGTCTCATAGAGAACAAAGATGGAGCATATTTTAAATTAGTCAATCTTCAACAACACCAGCGGCTATAA 3807 0.4313 MSDRSALSSVGSPEEGKKKKERKVPLLKLFSFADSYDYVLMAVGSVGACVHGASVPVFFIFFGKLINVIGLAYLFPQQASHQVAKYSLDFVYLSIVILFSSWTEVACWMHTGERQTAKMRMAYLRSMLNQDISLFDTEASTGEVISAISSEILVVQDALSEKVSSFRFRELINSSSEGIPETHSFASFLWQAGNFLHYISRFVAGFTLGFVRIWQISLVTLSIVPLIAVAGGLYAYVTVGLIAQVRKSYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALVNTYNNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVIVHKKIANGGDSFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERETVSKINSKTGRKSSKLDGHIQFKDVCFSYPSRPDIVVFNKLCLDIPPAKIVALVGGTGSGKSTIISLIERFYEPLSGQILLDGNDILELDLKWLRSQIGLVNQEPALFTTSIRENILYGKNDATVEELNHAVKLSDAESFINNLPERLETQVGERGIQLSGGQKQRIAISRAILKNPSILLLDEATSALDAESEKSVQEALDHVMVGRTTIIVAHRLSTIRNADMIAVVQEGRIVEIGNHEELISNPNSTYASLVQLQEKASLQSHQPEGPTSVAQRYSRELSCTSLGSSFRSDKESLGRVCADEVESVAKSSHVSVKRLYSMIAPDWFYGVSGTFCAFIAGAQMPLFALGISHALVSYYMDWDTTRHEVKKITFLFCGAAIVTITAHAIEHLSFGIMGERLTLRVREMIFSAILKNEIGWFDDTNNTSSMLSSRLEMDATLFRTIVVDRSTILLQNVGLVVASFIIAFMLNWRITLVVLATYPLIISGHISEKLFMKGYGGNLSTAYLKANMLAGEAVSNLRTVAAFCSEEKVLKLYANELVEPSKLSFKRGQISGIFYGISQFFIFSSYGLALWYGSVLMEKELVSFKSVMKSFMVLIVTALGMGETLALAPDLLKGNQMVASVFEVMDRKSGMVADAGEELKMVEGTIELKKIHFSYPSRPDVVIFKDFNLKVPSGRSIALVGQSGSGKSSVISLILRFYDPSSGRVMIDGKDIRRLHLKSLRKHIGIVQQEPALFATSIYENILYGREGASDSEVIEAAKLANAHSFISSLPDGYTTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESESVVQQALDRLMQNRTTVMVAHRLSTIRNANQISVLQDGKIIEQGTHSSLIENKDGAYFKLVNLQQHQRL 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0904 1268 CDD ABC_6TM_Pgp_ABCB1_D1_like 41 367 - -
Lele49g0904 1268 Gene3D - 392 645 IPR027417 -
Lele49g0904 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 394 630 IPR003439 GO:0005524
Lele49g0904 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 632 IPR027417 -
Lele49g0904 1268 SUPERFAMILY ABC transporter transmembrane region 692 1006 IPR036640 GO:0005524|GO:0016020
Lele49g0904 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1263 IPR027417 -
Lele49g0904 1268 ProSitePatterns ABC transporters family signature. 533 547 IPR017871 GO:0005524|GO:0016887
Lele49g0904 1268 SMART AAA_5 421 613 IPR003593 -
Lele49g0904 1268 SMART AAA_5 1052 1244 IPR003593 -
Lele49g0904 1268 Pfam ABC transporter 1044 1192 IPR003439 GO:0005524
Lele49g0904 1268 PANTHER ABC TRANSPORTER B FAMILY 6 635 - -
Lele49g0904 1268 FunFam ABC transporter B family member 4 1015 1267 - -
Lele49g0904 1268 CDD ABC_MTABC3_MDL1_MDL2 1025 1263 - -
Lele49g0904 1268 Gene3D - 1015 1267 IPR027417 -
Lele49g0904 1268 Pfam ABC transporter transmembrane region 192 342 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele49g0904 1268 Pfam ABC transporter transmembrane region 46 166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele49g0904 1268 Pfam ABC transporter transmembrane region 708 978 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele49g0904 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 708 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele49g0904 1268 Pfam ABC transporter 413 561 IPR003439 GO:0005524
Lele49g0904 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1025 1261 IPR003439 GO:0005524
Lele49g0904 1268 SUPERFAMILY ABC transporter transmembrane region 190 373 IPR036640 GO:0005524|GO:0016020
Lele49g0904 1268 CDD ABC_MTABC3_MDL1_MDL2 394 632 - -
Lele49g0904 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele49g0904 1268 ProSitePatterns ABC transporters family signature. 1164 1178 IPR017871 GO:0005524|GO:0016887
Lele49g0904 1268 Gene3D ABC transporter type 1, transmembrane domain 192 994 IPR036640 GO:0005524|GO:0016020
Lele49g0904 1268 SUPERFAMILY ABC transporter transmembrane region 20 165 IPR036640 GO:0005524|GO:0016020
Lele49g0904 1268 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1008 - -
Lele49g0904 1268 FunFam ABC transporter B family member 19 384 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0904 Lele-ChrLele49 5638835 5646925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0904 14 1264 Calmodulin-binding Proteins AT2G36910 48.168 0.0 1186