Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0900 ATGAGCTTTCAGGATATCGAAGCCGGCCGGCCTCTCGCTGCGAGGCGAAACCTAATCAATGGCAAGCAAGATCCTACACAGGCGGTGGCGTCCGGTGTATTTCAGATCAACACAGCTGTGTCCACGTTTCAGAGACTCGTCAACACCCTTGGAACCCCGAAAGACACGCCCGAGCTCCGCGAGAAGCTGCACAAGACTAGACTGCATATTGGGCAATTAGTGAAGGATACATCAGCTAAACTTAAGCAAGCTAGTGAAATAGATCATCATGGTGAAGTTAATGCGAGCAAGAAAATAGCAGATGCCAAACTTGCAAAAGACTTTCAGGCAGTGTTGAAAGAGTTTCAAAAGGCTCAACGGCTTGCCGCTGAGAGGGAAACAGCTTACACTCCTTTTGTTCCACAAGCGGTTCTTCCCTCAAGCTATACAGCTAGTGAGGTAGATGCCTCTGATAAGAGCCAGGAACAGCGGGCTCTTCTTGTTGAATCCAGAAGGCAGGAGGTCTTGATGTTGGATAATGAGATTGTGTTTAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAGGAAGTCCAGCTGCAAATTGGCGAAGTAAATGAGATTTTCAAAGATCTTGCCGTGCTTGTTCATGAGCAAGGAACCATGATTGATGATATTGGTACCAACATTGAGAACTCTCATGCAGCAACTGCGCAAGCAAAATCCCAATTAGGGAAAGCTGCAAAGACCCAAAGATCAAATTCATCTCTGACTTGCTTACTCTTGGTGATCTTCGGAATTGTGCTTCTCATTGTGATCATAGTCCTTGCGGCCTAG 819 0.4652 MSFQDIEAGRPLAARRNLINGKQDPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHGEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDASDKSQEQRALLVESRRQEVLMLDNEIVFNEAIIEEREQGIQEVQLQIGEVNEIFKDLAVLVHEQGTMIDDIGTNIENSHAATAQAKSQLGKAAKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0900 272 PANTHER SYNTAXIN 27 264 IPR045242 -
Lele49g0900 272 SUPERFAMILY t-snare proteins 22 234 IPR010989 GO:0016020|GO:0016192
Lele49g0900 272 Gene3D - 173 272 - -
Lele49g0900 272 SMART SynN_4 13 127 IPR006011 GO:0016020
Lele49g0900 272 FunFam Syntaxin-22 like 172 272 - -
Lele49g0900 272 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Lele49g0900 272 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele49g0900 272 FunFam Syntaxin-22 like 20 133 - -
Lele49g0900 272 Pfam SNARE domain 215 267 IPR000727 -
Lele49g0900 272 SMART tSNARE_6 174 241 IPR000727 -
Lele49g0900 272 CDD SynN 23 165 IPR006011 GO:0016020
Lele49g0900 272 Gene3D - 20 133 - -
Lele49g0900 272 CDD SNARE_Qa 182 240 - -
Lele49g0900 272 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0900 Lele-ChrLele49 5617023 5619857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0900 1 260 SNARE and Associated Proteins AT5G46860 78.846 9.88e-148 412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0900 49 5617023 5619857 Lele49g0900 49 5617023 5619857 ECH
Lele49g0900 49 5617023 5619857 Lele51g0916 51 5697318 5700115 hybridization
Lele49g0900 49 5617023 5619857 Lele52g0927 52 6041725 6044633 hybridization