Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0888 ATGATCCAAATACCCCCGGCATTGCCTGTTTGGTTTGATGCAGATTTGATTATGTTGGCTTTAGGTACCCATGAAATTCATTTCTCAGTCTTAAGAGAGATTAAAAAGCCCTCATTCCAGTTTCTAAACATTTGGACTCTGAGGGAATATCTGGAATATGAGATGAGAATTATACCAAATATTCCATTTGAGATTCATTTTGAAAGCATTGTGGATGATTTTATCTTGTGTTTCTTTATTGGAAATGATTTTCTACCACATATGCCTACACTAGAGATTCATGAGGGTGCAATCAACTTGCTGATGGCAGTATACAAGAAAGAATTGAAGGCATTGGGGAGTTATTTAGCTGATGGGAGCAAGTCATGTTTAAGCAGGGTGAAACGTTCTATTCAGGCTGTTGGATCTTTCGAAGATGCAATTCTCCAGAAAGCTAGGTTGCATCAGCGGCAAGTGGAGAGAATTAAACAACAATCTGAGGAGGGCTCTGAGCGGCCTCACAAAGTTGCTAGGTTATCTTCAGGAGCAACTACCAATGGTGCTGCTATTGTTGAAGCTGAGAGTAATCTTGAAATTGATGTTCAAGAAGATAACAAAGATGAATTGAAAGCTAATACAGAAGAGGACAAGATTATGTTGAGAGAAACAGGTTGGAAACAGAGGTATTATAAGGAAAACTTTTCTGCTAAAAATCCTGAGGAAGTTGAGTTTATAAGCGAAGATGTTGTCTTGAAATGCACAGAAGGCTTATGTTGGGTTATGCACTATTGCTCTTGGCAGTTGTTCCATCCTTATCACTATGCCCCATTTGCATCTAACCTGAAGGGCCTTAGCGAACTAGACATAAATTTTGAGCTGCCGACCCCATTCAAACCGTTTGATCAACTTCTAGGGGGTTTTCCTGCTGCAAGCTTTCATGTCCTCAGCTACGCACGAGATTGCTGGTGTAGTGACAGAGGTGGGAAGCAATGTAGAAAAGTTCAAAGTTGGAGACAGGGTTAGTACTTTGGTCTTGACGAGCCGGGCCTTCATGTGGGTGTGGTTGGTCTCGTTGAGCTTGGCCATATGGCTGTCAAGTTTGCCAAAGCTTTCGAAGCCAAGGTTACTGTCATTAGTACTTCTTCTAACGAGAATGAAGTCATTCAACATCTTAGAACAGGTGACAAGATGGAGGCTGCAAGGGGGACTTTGGATGGGATCATTGACACAATTTCTGCACAGCTTCCTCTGGGGCCATTGATTGATCTGTTGAAGTCTAATGGAAAAATTGTATTGGTGGGTGTACCTGAGAAGCCTCTAGAGTTGCCAGTGTTTCCTTGCGGGCTGAAGGAGACACAAGAAATGATGGATTTTGCTGCCAAGCACAATGTGAAACCTGACATAGAAGTTATTTCAGTGGATTACGTGAATACCACAATGGAGCGTCTCCTTAGACCTGATGTCAAATATCATTTTGCGATTGACATTGGCAACACATTGAAGCCAACAACCTCTTAG 1497 0.4188 MIQIPPALPVWFDADLIMLALGTHEIHFSVLREIKKPSFQFLNIWTLREYLEYEMRIIPNIPFEIHFESIVDDFILCFFIGNDFLPHMPTLEIHEGAINLLMAVYKKELKALGSYLADGSKSCLSRVKRSIQAVGSFEDAILQKARLHQRQVERIKQQSEEGSERPHKVARLSSGATTNGAAIVEAESNLEIDVQEDNKDELKANTEEDKIMLRETGWKQRYYKENFSAKNPEEVEFISEDVVLKCTEGLCWVMHYCSWQLFHPYHYAPFASNLKGLSELDINFELPTPFKPFDQLLGGFPAASFHVLSYARDCWCSDRGGKQCRKVQSWRQGXYFGLDEPGLHVGVVGLVELGHMAVKFAKAFEAKVTVISTSSNENEVIQHLRTGDKMEAARGTLDGIIDTISAQLPLGPLIDLLKSNGKIVLVGVPEKPLELPVFPCGLKETQEMMDFAAKHNVKPDIEVISVDYVNTTMERLLRPDVKYHFAIDIGNTLKPTTS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0888 498 Coils Coil 185 205 - -
Lele49g0888 498 Pfam Zinc-binding dehydrogenase 353 446 IPR013149 -
Lele49g0888 498 Gene3D - 335 459 - -
Lele49g0888 498 Gene3D - 11 121 - -
Lele49g0888 498 Pfam Xrn1 helical domain 65 308 IPR041412 -
Lele49g0888 498 PANTHER 5'->3' EXORIBONUCLEASE 13 309 IPR027073 -
Lele49g0888 498 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 340 458 IPR036291 -
Lele49g0888 498 Gene3D - 460 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0888 Lele-ChrLele49 5483882 5493304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0888 324 495 Monolignol Biosynthesis Gene Families AT4G37990 53.093 3.38e-44 157