Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0877 ATGGCAGCTTTCACAGTGTACACAACACAATCTCTCAACACGAATTTCTCCTTCACAACCCCATCAAAATCCCACTTGGGTTTTCACCAAAAACAGGTTCTTTTCTACAGAAGCAAAACCGGCAGCAGAAGTAACAGCAGCAGCAGACCATGGGTGATAACATGCTCTGCAGGTGACTCACAGACTGTGGTTATTGGTCTAGCAGCAGACTCAGGATGTGGGAAGAGTACCTTCATGAGAAGACTTACCAGTGTGTTTGGAGGAAAAGCAGAACCACCAAAAGGAGGGAATCCAGATTCCAACACACTGATAAGTGACACAACCACAGTGATATGTTTGGATGATTATCATTCTCTTGACAGAACAGGAAGGAAGGAAAAGGGAGTCACAGCACTTGACCCAAGAGCCAACGATTTTGATCTCATGTATGAACAAGTTAAGGCCATCAAAGAAGGAATTGCTGTTGAGAAACCTATTTACAACCATGTCACTGGTCTCTTGGACCCACCTGAGCTCATCCAACCACCCAAGATCTTGGTCATCGAAGGCTTGCACCCAATGTTTGATCCTCGGGTGAGAGAACTATTGGACTTCAGCATCTACTTGGACATCAGCAATGAGGTGAAATTCGCCTGGAAAATTCAGAGAGACATGGCAGAACGTGGGCACAGCCTCGAAAGCATCAAAGCTAGCATCGAAGCAAGAAAACCCGATTTCGACGCTTATATTGATCCTCAGAAGCAATATGCAGATGCAGTGATAGAAGTGTTACCAACAAAGTTAATACCAAACGATAATGAAGGGAAGATATTAAGAGTGAGATTGATACAGAAAGAAGGAGTTAAGAATTTTAGCCCAGTTTACTTGTTTGATGAAGGCTCCACCATTTCCTGGATTCCTTGTGGAAGGAAGCTCACTTGCTCTTACCCTGGCATCAAATTCTTCTATGGTCCTGAAACTTACTACGGTCATGAGGTATCAGTTGTAGAGATGGATGGGCAATTTGACAGACTAGATGAGTTAATATATGTTGAGAGCCATCTAAGCAACCTGTCATCCAAGTTCTATGGAGAAGTTACACAACAAATGTTGAAGCATGCTGAATTTCCCGGCAGTAACAACGGCACAGGTCTCTTCCAAACCATAATTGGCTTGAAGATCAGAGATCTGTTTGAGCAGATTGTAGCAAGCAGGTCTCAGACACCAGTAAAAGCGGCTAAAGCTTAA 1227 0.436 MAAFTVYTTQSLNTNFSFTTPSKSHLGFHQKQVLFYRSKTGSRSNSSSRPWVITCSAGDSQTVVIGLAADSGCGKSTFMRRLTSVFGGKAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKEGIAVEKPIYNHVTGLLDPPELIQPPKILVIEGLHPMFDPRVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTKLIPNDNEGKILRVRLIQKEGVKNFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPETYYGHEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHAEFPGSNNGTGLFQTIIGLKIRDLFEQIVASRSQTPVKAAKA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0877 408 Gene3D - 59 297 IPR027417 -
Lele49g0877 408 PANTHER URIDINE KINASE 47 303 - -
Lele49g0877 408 FunFam Phosphoribulokinase 59 289 - -
Lele49g0877 408 CDD PRK 64 352 - -
Lele49g0877 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 333 IPR027417 -
Lele49g0877 408 ProSitePatterns Phosphoribulokinase signature. 213 226 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele49g0877 408 PRINTS Phosphoribulokinase family signature 178 196 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele49g0877 408 PRINTS Phosphoribulokinase family signature 231 254 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele49g0877 408 PRINTS Phosphoribulokinase family signature 69 86 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele49g0877 408 PRINTS Phosphoribulokinase family signature 213 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele49g0877 408 Pfam Phosphoribulokinase / Uridine kinase family 64 262 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0877 Lele-ChrLele49 5413205 5416325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0877 22 254 PRT Gene Family AT1G55810 25.833 1.85e-16 79.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0877 49 5413205 5416325 Lele51g0894 51 5491505 5494660 hybridization
Lele49g0877 49 5413205 5416325 Lele52g0894 52 5796177 5800696 hybridization