LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0860	ATGGATACTAAACCTAAGTCCGATCAGGTCGTCCTCTTCATCGACCACCTCAACGCTAGCCCTCCTTCTTCCATGGAAACTCATTACAACAACGACGACACTACCACCAACAAGCCCAAACTCAATTCCAGAGTCCAAACCCTCAAACGCCTCAGCTTCTCCAAACCCAAATCTCGCATCCTAGAACACAACCACCCACTCTACAACACCAACTTCATCACTGTCCCCGAAGAAGCCGCCCAAGACCCTTCCCAGTATTCTTCCACCGACGACGAATGGAACGACGACGACGACCACGACGACGAAGATGATGATGATCAGTTCGAGGAGGACGGCCGACCCAAGTCCAACAAGAAAACCAAACGTCGTCGCCTTCGGAAGATTCAATGGAAACGCGTGGTGGAGTGGGCCTTGTTCCTCATCATATTAACTAGCTTGGTCTCTTGCATCACTATTCCTTCCATCAAAGCAAAACATTTGTGGGGTTTGGAGATTTGGAAATGGTGTTTGTTGGGGATGGTCACGTTCAGTGGACGATTAGTCTCCGGCTGGCTCGTGGCTATCTCCGTCTTCATCATAGAACGAAACTTCATGCTCAGAGAGAAAGTGTTATATTTCATCTACGGTCTCAGAAAAAGCATCAGAAACTGCATATGGCTTGGCCTCGTTTTATTCTCTTACTGGACAGTCGTCTTCGACAACATCCAGAAGAAAAACCATAAGTTCCTCAACAAGGTGTTTCAGGCCCTTGTCGCCGTCCTCGTAGGAGCCATAATCTGGCTCGTGAAGATCGTTCTTGTGAAACTGCTAGCTTCGTCGTTTCACGTCGCGACCTACTTCGACAGAATGAAAGAGAGCGTGTTCCATCACTACATATTGGACACACTCTCGGGGCCTCCAATGGAGGAGAACGACCAAACGCAGCACCCACTGACGGGGTCGAAATCCATGCCAAGGAACTGGAAGGGAAGGAGCAAGGCAATGAAGGAGGCGAAGAACTTGTACAAGTCGAAGAAGTTTGGGTCGAGGAAGATAGATATGGAGAAGCTGAGAGAACTGAGTATGGAGAGCACGGCGTCGGCGTGGAGCGTGAAGAGGCTTGTCCACTACGTGAGGTCGTCGGGCTTGTCGACGATTTCCCGGACCGTCGATGATTTCGGGAACGCTGAGTCGGAGATCTGTAGCGAGTGGGAAGCTAGGAACTGTGCGCAGAGGATTTTCAAGAACGTTGCTAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCATGAGATTCTTGAAGAGAGTTGAGGTTCATACTATATTCCCACTCTTCGAAGGTGCCCTTGAGACTGGAAAGATCTCTAGGTCTTCATTTAGAAACTGGGTGATTCGAGCTTATTATGAAAGGAAGGCTCTGGCACAATCACTGAATGACACGAAAACAGCAGTGCAACAGCTCCACAAACTAGCAAGCTCAATAGTGATCGTGATAATAATTATAGTGCTGCTTTTGGTGATGGAGCTGGCTACTCTCAAGGTCGTACTTTTCTTCATGACACAAATAGTTCTTGTTGGAGTTGCCTTCCAGGGTACCTGCAAAACTGTGTTGGAGGCCATCATCTTCGTCTTCATCATGCACCCCTTCGACATTGGAGATCGCTGTGTCATTGATGACGTCCACATGATTGTGGAAGAGATGAATATCTTGACGACTGTGTTTCTTCGATACGACAATGAGAAAATCTACTATCCCAACGCAGTTTTGCTCACCAAGCCAATAAGCAATTTCTACAGGAGCCCAGAGATGTGGGATTCTATTGATTTCGTTGTGGATGTTTCCACACCTATGGAGACCATCATTTCACTCAAGAAAGCAATTCAAACGTACATAGAGAGCAAGCCCAAGTATTGGAATCCAAAGCACGCAGTGATAGCGAAGGAGATAGAGAATGTGGATAAGCTGAAGCTGTGTCTTTGTGTTCAACACACAATCAACCATCAGAACTATGGGGAGAGAAACAATCGGATGACAGAGCTGCTGTTGGAGCTGAAGAAGATCTTTGAGGTGCATGGAGTAAAGTACAATCTTCTCCCCCAGGAGGTCCACCTTACCAAGATGAACAGTACCCAAAATGGGAGGCCTGTGTTGTAA	2136	0.4747	MDTKPKSDQVVLFIDHLNASPPSSMETHYNNDDTTTNKPKLNSRVQTLKRLSFSKPKSRILEHNHPLYNTNFITVPEEAAQDPSQYSSTDDEWNDDDDHDDEDDDDQFEEDGRPKSNKKTKRRRLRKIQWKRVVEWALFLIILTSLVSCITIPSIKAKHLWGLEIWKWCLLGMVTFSGRLVSGWLVAISVFIIERNFMLREKVLYFIYGLRKSIRNCIWLGLVLFSYWTVVFDNIQKKNHKFLNKVFQALVAVLVGAIIWLVKIVLVKLLASSFHVATYFDRMKESVFHHYILDTLSGPPMEENDQTQHPLTGSKSMPRNWKGRSKAMKEAKNLYKSKKFGSRKIDMEKLRELSMESTASAWSVKRLVHYVRSSGLSTISRTVDDFGNAESEICSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEVHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASSIVIVIIIIVLLLVMELATLKVVLFFMTQIVLVGVAFQGTCKTVLEAIIFVFIMHPFDIGDRCVIDDVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLTKPISNFYRSPEMWDSIDFVVDVSTPMETIISLKKAIQTYIESKPKYWNPKHAVIAKEIENVDKLKLCLCVQHTINHQNYGERNNRMTELLLELKKIFEVHGVKYNLLPQEVHLTKMNSTQNGRPVL	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0860	711	MobiDBLite	consensus disorder prediction	302	321	-	-
	Lele49g0860	711	MobiDBLite	consensus disorder prediction	20	40	-	-
	Lele49g0860	711	MobiDBLite	consensus disorder prediction	89	109	-	-
	Lele49g0860	711	MobiDBLite	consensus disorder prediction	78	119	-	-
	Lele49g0860	711	PIRSF	Memb_At2g17000	7	709	IPR016688	-
	Lele49g0860	711	SUPERFAMILY	Sm-like ribonucleoproteins	533	591	IPR010920	-
	Lele49g0860	711	MobiDBLite	consensus disorder prediction	302	319	-	-
	Lele49g0860	711	Gene3D	-	542	591	IPR023408	-
	Lele49g0860	711	MobiDBLite	consensus disorder prediction	19	40	-	-
	Lele49g0860	711	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	23	705	IPR016688	-
	Lele49g0860	711	FunFam	Predicted mechanosensitive ion channel	542	591	-	-
	Lele49g0860	711	Pfam	Mechanosensitive ion channel	486	688	IPR006685	GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0860	Lele-ChrLele49	5317407	5323090	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g0860	5	702	Mechanosensitive Ion Channel Family	AT5G12080	42.779	0.0	570