Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0856 ATGGCTGCAAATCTCACCGGTGGGGCGATAATGACGATGTGCAGGGACGATTTCTCTTGCGAGGACCTGAAGCCTGTTCTTCAAGTGATTGACTTGAAGTTGGTGCAGTCGCAGCAGAATAACAACACGGAGAGGTATAGGGTTGTGCTTTCAGATGGTTCTCATTACCAGCAAGGGATGCTTGCTACTCAGAAGAACGAGTTGGTCCATGCTGGGCGATTGCAGAAGGGCTCTATTGTTGAGCTGACTCAGTTTATCTGTAATGTTGTCCAGAGTCGCAATTATGATTTTGAAGGGCGATTGGTCTCCTTCATTTCTGTTTCGATTGGCATGGAAGAAATAACTAAGCCTCTGGATTGGGATGATCTGATTGGCGTGGGGTCATTTGATGATGTGGTTGTCTCATTCACCATGAACAGGATTATCATCATTATCGAGCTGAATATGGTCCTTGACAGATGTGAGATGATTGGAGAACCTGTCCCGGCACCAAGAGCTGTCCCTGCATCATCTTCCACTGGTCAGTCTGGAGCTAACCCTATCATTCGTCCACAAATCAATAATACTGCCAATAGTGCAAGGCATGGTGCTGCAAATGTCCATCCTATATTGCCTCAAGTAGAGCCTAGAGCTGCACCTACTTTACCTTTTCCAAGAACCCCACAAAATGTCTATATTCGTGCACCACAGCCTATGCATAGACAGTCTTCTCCAATTTACAATAACAGGGGATCAATGGCCAGAAATGAAGCTTTACCAAGGATAATTCCAATAGCTGCATTGAATCCATACGTAAGCATGTGGACAATTAAGGCTAGAGTTACAGCAAAGGCAAGCCTTAGGCAATACAACAATGCCAGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGTGCAACTTGCTTTAATGCGGTAGCTGAACAGTTCTATCATCAAATTGAAATTGGTAAAGTATATATGATTTCCAGGGGGAGTATAAAGCCAGCTCAAAAAAATTTCAATCACCTTCCTAATGATCAAGAACTGACCCTTGATGTTACATCCATCATACAGCCATGCAACGATGATGAGGCAATTCCAATGCGTCTTTTTAATTTTCGCCCTATTAGTGATGTTGAAAGCATCGAAAGTTCGAGTATTGTGGATGTGATTGGTGTGGTATTTTCTGTTAGTCCTACAACTTCAATCATGAGAAAGAATGGTACTGAAACTCTGAAGAGAGCCCTCCAGTTGAAGGATATGTCTGGTTGTAGTGTTGAACTAACCCTATGGGGAGATTTTTGTAATGCAGAAGGACAACGGTTGCAGAATACTTGTGACTCAGGCGCATTTCCAGTTTTGGCTGTGAAAGCTGCCAGGGTAAATGAATTCAATGGGAAGGCCCTTGGGACCATAGCCAATAGTCAGCTATTTATAGAGCCTGATTTTCCTGATGCTTACAGGTTAAAAGAATGGTTTGACAAGGAAGGGAGGAATGTTCCAGCTATTTCTATTTCCAGAGAATCATTCAATGTTGGTAAGACTGATATGAGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCGGAGAAGCCTGATTGGATTAGCATCTGTGCAAGTGTTTCATTCATTAAGGTCGATTCTTTCTGCTATACAGCCTGTCCAATCATGATAGGGGATAGGAAATGCAGCAAAAAAGTGTCCAATAATGGAGATGGAAAATGGCGGTGTGATAGATGTGACCAGAATGTTGATGCTTGTGAATACAGGTATATACTGCAACTCCAAATACAGGATCACACTGGGCTAACATGGGTAACTGCATTTCAGGAGTGTGGTGAGGAGATAATGGGCTTACCTGCCAAAGATCTTTATTATATGAAATATGAAGAGCAGGATGATGAAAGATTTGCACAAGTCATCCGTAAGGTTCTATTTACTAAATACATATTCAAGTTAAAAGTTAAGGAAGAGACATTTGGTGATGAACAGCGTGTGAAGTCAACAGTAGTGAGAGCAGAGAAGGTGGACTTTTCATCTGAATCAAGATTTCTTTTGGATTTGATTGATAAGCTTAAAGCTGAGAAGGTAGAAGGTATCCATCTTAACTCTGTAATCAGTAATGCTGGGACGCAGAATGTTGGAACTGGCCTGGCTGGGCAACCAGCTTATGATCCCATAACAAGCAACAGTAGTGTGAGTAGAGAATATGGGACAGCAAATCAAGTGGGTCAGTATGAAACCCAACATAGGAGTTCTTTTGCTTCAGCTGGGTCTTCTATTTCATTTATGCCTTGCAGCAATTGTGGAGGCTCTGGCCATAGCTCTATGCGTTGCCCAAACATTACAGGTCTACCTCGACAGTCCGTGGCAGGAGGGGCCTATGCAAATAAGGCATCTTCAGGGTTAGGTGGTGGTGTTGCCACTGGCGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCAAGAGACTGTCCTAGTCTCAATGCAGCACCCTCTTCAGCTTATGGAAGTAGTGTTCATGGAGGACATGGGTTTGTTCAAAGGCAACAGCTTGGCGGATTTTGA 2580 0.4287 MAANLTGGAIMTMCRDDFSCEDLKPVLQVIDLKLVQSQQNNNTERYRVVLSDGSHYQQGMLATQKNELVHAGRLQKGSIVELTQFICNVVQSRNYDFEGRLVSFISVSIGMEEITKPLDWDDLIGVGSFDDVVVSFTMNRIIIIIELNMVLDRCEMIGEPVPAPRAVPASSSTGQSGANPIIRPQINNTANSARHGAANVHPILPQVEPRAAPTLPFPRTPQNVYIRAPQPMHRQSSPIYNNRGSMARNEALPRIIPIAALNPYVSMWTIKARVTAKASLRQYNNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYHQIEIGKVYMISRGSIKPAQKNFNHLPNDQELTLDVTSIIQPCNDDEAIPMRLFNFRPISDVESIESSSIVDVIGVVFSVSPTTSIMRKNGTETLKRALQLKDMSGCSVELTLWGDFCNAEGQRLQNTCDSGAFPVLAVKAARVNEFNGKALGTIANSQLFIEPDFPDAYRLKEWFDKEGRNVPAISISRESFNVGKTDMRKTISQIKDEKLGTSEKPDWISICASVSFIKVDSFCYTACPIMIGDRKCSKKVSNNGDGKWRCDRCDQNVDACEYRYILQLQIQDHTGLTWVTAFQECGEEIMGLPAKDLYYMKYEEQDDERFAQVIRKVLFTKYIFKLKVKEETFGDEQRVKSTVVRAEKVDFSSESRFLLDLIDKLKAEKVEGIHLNSVISNAGTQNVGTGLAGQPAYDPITSNSSVSREYGTANQVGQYETQHRSSFASAGSSISFMPCSNCGGSGHSSMRCPNITGLPRQSVAGGAYANKASSGLGGGVATGECFKCHQTGHWARDCPSLNAAPSSAYGSSVHGGHGFVQRQQLGGF 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0856 859 SMART c2hcfinal6 769 785 IPR001878 GO:0003676|GO:0008270
Lele49g0856 859 SMART c2hcfinal6 815 831 IPR001878 GO:0003676|GO:0008270
Lele49g0856 859 Pfam Replication factor-A C terminal domain 538 689 IPR013955 -
Lele49g0856 859 CDD RPA1N 8 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele49g0856 859 Gene3D - 254 364 IPR012340 -
Lele49g0856 859 ProSiteProfiles Zinc finger CCHC-type profile. 816 831 IPR001878 GO:0003676|GO:0008270
Lele49g0856 859 FunFam Replication protein A subunit 254 363 - -
Lele49g0856 859 SUPERFAMILY Nucleic acid-binding proteins 1 92 IPR012340 -
Lele49g0856 859 Pfam Replication protein A OB domain 377 480 IPR031657 -
Lele49g0856 859 FunFam Replication protein A subunit 366 504 - -
Lele49g0856 859 FunFam Replication protein A subunit 505 696 - -
Lele49g0856 859 CDD RPA1_DBD_A 257 359 - -
Lele49g0856 859 Pfam OB-fold nucleic acid binding domain 268 357 IPR004365 GO:0003676
Lele49g0856 859 Gene3D - 740 839 - -
Lele49g0856 859 SUPERFAMILY Nucleic acid-binding proteins 372 501 IPR012340 -
Lele49g0856 859 Gene3D - 3 163 IPR012340 -
Lele49g0856 859 SUPERFAMILY Nucleic acid-binding proteins 255 367 IPR012340 -
Lele49g0856 859 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 695 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele49g0856 859 Gene3D - 366 504 IPR012340 -
Lele49g0856 859 FunFam Replication protein A subunit 4 95 - -
Lele49g0856 859 Pfam Zinc knuckle 815 831 IPR001878 GO:0003676|GO:0008270
Lele49g0856 859 PANTHER REPLICATION FACTOR A 1, RFA1 268 681 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele49g0856 859 CDD RPA1_DBD_B 388 495 - -
Lele49g0856 859 Gene3D - 505 696 IPR012340 -
Lele49g0856 859 ProSiteProfiles Zinc finger CCHC-type profile. 770 785 IPR001878 GO:0003676|GO:0008270
Lele49g0856 859 SUPERFAMILY Retrovirus zinc finger-like domains 808 834 IPR036875 GO:0003676|GO:0008270
Lele49g0856 859 SUPERFAMILY Nucleic acid-binding proteins 519 696 IPR012340 -
Lele49g0856 859 CDD RPA1_DBD_C 522 695 IPR013955 -
Lele49g0856 859 Pfam Replication factor-A protein 1, N-terminal domain 5 93 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0856 Lele-ChrLele49 5295950 5299290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0856 1 811 Core DNA Replication Machinery Family AT5G45400 47.072 0.0 801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0856 49 5295950 5299290 Lele49g0856 49 5295950 5299290 ECH
Lele49g0856 49 5295950 5299290 Lele51g0873 51 5357114 5360424 hybridization
Lele49g0856 49 5295950 5299290 Lele52g0872 52 5645099 5647829 hybridization