Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0849 ATGGTTAAGCATAACAATGTTATCCCCAGTGGTCACTTCCGGAAGCATTGGCAAAATTATGTGAAGACATGGTTCAATCAACCAGCAAGGAAGACGAGGAGACGTTTAGCTCGGCAAAAGAAAGCCGTTAAGATTTTCCCTAGGCCCACAGCTGGACCTCTTAGACCTGTTGTTCATGGTCAAACTTTGAAATACAACATGAAAGTCAGAGCTGGTAAAGGATTTTCCCTCGAAGAACTCAAGGCTGCAGGCATTCCTAAAAAGTTTGCTCCAACCATTGGCATTGCTGTGGATCATCGCCGTAGGAACCGATCTCTAGAAGGTCTTCAGACCAATGTCCAGAGGCTGAAAACATACAAGGCCAAGTTGGTGGTGTTCCCAAGGCGGGCACGCAAGTTCAAGGCTGGGGATTCTGCTGCTGAGGAGCTTGCCAATGCCACTCAAGTGCAGGGACAGTACTTGCCAATTGTGAGGGAGAAGCCATCTGTTGAGCTTGTTAAGGTCACAGATGAAATGAAGGCATTTGATGCTTATAAGAAGCTTCGTGTTGAACGCACAAACGCACGCCATGTCGGTGCCAGGCTAAAGAGGGCCGCTGAAGCAGAAAAGGAAGACAAGAAGTGA 624 0.4776 MVKHNNVIPSGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRAGKGFSLEELKAAGIPKKFAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRRARKFKAGDSAAEELANATQVQGQYLPIVREKPSVELVKVTDEMKAFDAYKKLRVERTNARHVGARLKRAAEAEKEDKK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0849 207 FunFam 60S ribosomal protein L13 166 207 - -
Lele49g0849 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lele49g0849 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lele49g0849 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lele49g0849 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Lele49g0849 207 Gene3D - 167 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0849 Lele-ChrLele49 5250463 5251486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0849 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 85.864 3.25e-125 350
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0849 49 5250463 5251486 Lele51g0866 51 5313798 5314820 hybridization
Lele49g0849 49 5250463 5251486 Lele52g0866 52 5604049 5605375 hybridization