Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0829 ATGGGATCCAGTGGTAGTAAAGCCGTTGCGTCTTGCAATTCGTCGTCGACGTCGTCGTCTTCGGGCAGTTTTCGTAAAGTTCGATCTAGAGGGCATAGAGGTTTTCAGTCTTATTGTTTAGGAACAACATCTGGATCTCATGACAATGACAATGACGACCAGGTGTGTGATCAGAGTAAAGAAAACGATCGTAATGTTACATACTCCAATGGTGAAGAAACAGATGCAGATGAGATGATATCGAAGTCTTTCAGAAAGATTAAATCTGATAAAATGCCATGTATACCTACTAATGATCACCTTGATGAGTGGAGTCAAACAAGCATTTCCAATACTGCATCTAGAACTGGTAGCAGTTCTGATCGTCCAGCTTCAACTCAGTCTTTGAACCCTTCAAGTCGATTCCTTTCTCAGTTTAGCCTCATTCCCGGTAACGTAAGCTTCAGACTAAGCAGAACCACAAGTTTGGGGTCAGCACGGCCTTGCCCTGTGTCTCCTGCAGGCCTCTCAATATTTAACAATGAAGATGACCTTAATCCACAGCCTGGGCCTGCCGGCAGCTTTGCTAATAAACATGAAGCTCTACAATGCAGTGACTTGCTTCCTTCATCACATTGCTATGAAGACACTTCTATTAATTTAAGGTCTAGTGTCCCTTCATCAGATTCCTATGGCAACTTGCAAAACAATTCAACAAATTCTTCTATGCAGAATATGATTAGAGATGAAAATGGTGCGAGAGAAGCGTTAAATATCAACTTATTTTCTCCAAGAATTCATGCCAGAACAGAAAACATTGAGATGAGACCTAATGATCGCCGAAATGGAGCTCGAGAACCTGTTGAACGGAATGTTCGCTTTAGTCGTACTTTGAGTGTTGGAAGGCTCCGTGATAGGGTTCTTCGCCGATCAACAATATCAGACTTCACCTTTTGCCCACTGCAACAAGAAAGGGATGCAACAGATGTTAGTCAAGCTATTAGAAGACAAGCAGGGGAGAGAGAGTCAAGAGTGCTACCATCTGACGGTGACTCTACAAGTTCCCCTTCTACATCTGGATATCCTCCATCCAATATGTCTAGCTCCTTGTTTGGCATCCAAGACTATGAGGTCGAGTCTTCACGATCAAGAGAGGCTAGGTACCGTGATCTACTGGAAAACAGATCCAATTTCCTAGAACGGAGAAGAAGAATACGGTCCCAGGTCCGCGCTCTTCAACGATTGGGCAGCCGATTTGAAAACCTGTCTGGGCATGATAGGTCATGTAGTTTATCTGGCCAACATAGAAATGGTCGTTGTACATGCCGAATGAGTAATCATGATGCCAATTCAAATGATGATAGTGGGGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCCGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTTTATCTTCCCGCCCTTCTGTTTCTTCCATCGGATCTGTTCCTGCACCTTATGAAGTTGTAGAATCCTTGCCTGTCAAATCATACACAAAGTTGCATAAACATCAAGAGGATGCCGCTCAATGCTATATATGCCTTGTTGAGTATGAGGATGGAGACAGCATGCGAGTACTACCTTGTCATCATGAATTTCATTTAACATGCATAGACAAGTGGCTAAAGGAGATTCACAGGGTATGCCCACTATGCCGTGGGGACATCTGCAATGCTGATTCTATACCAACCGAAAACTGA 1722 0.4338 MGSSGSKAVASCNSSSTSSSSGSFRKVRSRGHRGFQSYCLGTTSGSHDNDNDDQVCDQSKENDRNVTYSNGEETDADEMISKSFRKIKSDKMPCIPTNDHLDEWSQTSISNTASRTGSSSDRPASTQSLNPSSRFLSQFSLIPGNVSFRLSRTTSLGSARPCPVSPAGLSIFNNEDDLNPQPGPAGSFANKHEALQCSDLLPSSHCYEDTSINLRSSVPSSDSYGNLQNNSTNSSMQNMIRDENGAREALNINLFSPRIHARTENIEMRPNDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTISDFTFCPLQQERDATDVSQAIRRQAGERESRVLPSDGDSTSSPSTSGYPPSNMSSSLFGIQDYEVESSRSREARYRDLLENRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCSLSGQHRNGRCTCRMSNHDANSNDDSGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKSYTKLHKHQEDAAQCYICLVEYEDGDSMRVLPCHHEFHLTCIDKWLKEIHRVCPLCRGDICNADSIPTEN 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0829 573 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 572 - -
Lele49g0829 573 FunFam Putative RING zinc finger domain superfamily protein 487 565 - -
Lele49g0829 573 MobiDBLite consensus disorder prediction 50 79 - -
Lele49g0829 573 MobiDBLite consensus disorder prediction 109 131 - -
Lele49g0829 573 MobiDBLite consensus disorder prediction 1 25 - -
Lele49g0829 573 SMART ring_2 518 559 IPR001841 -
Lele49g0829 573 MobiDBLite consensus disorder prediction 1 79 - -
Lele49g0829 573 MobiDBLite consensus disorder prediction 217 237 - -
Lele49g0829 573 CDD mRING-H2-C3H2C2D_ZSWM2 517 560 - -
Lele49g0829 573 ProSiteProfiles Zinc finger RING-type profile. 518 560 IPR001841 -
Lele49g0829 573 Pfam Ring finger domain 517 560 IPR001841 -
Lele49g0829 573 MobiDBLite consensus disorder prediction 330 362 - -
Lele49g0829 573 SUPERFAMILY RING/U-box 496 565 - -
Lele49g0829 573 MobiDBLite consensus disorder prediction 341 362 - -
Lele49g0829 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 565 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0829 Lele-ChrLele49 5134596 5138286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0829 236 567 C3H Transcription Factor Family AT5G45290 59.238 3.46e-114 348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0829 49 5134596 5138286 Lele49g0829 49 5134596 5138286 ECH
Lele49g0829 49 5134596 5138286 Lele51g0850 51 5206050 5209828 hybridization