Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0817 ATGGCGAGTGATTCTGGCACAAAACCTGCACCTGCTTCTTCGTCTTCCTCAACTGCAGGGGAATCTTACATTGGGAGCTTTATCAGTCTGATTTCCAAGTACGAGATTCGTTACGAAGGCGTTTTGTTTCACCTCGACGTCCGGGATTCCACCATTGGCTTGAAGAGTGTCAGATCTTTTGGGACTGAGGGGAGAAGAAAAGATGGTCCACAAGTTCCTCCAAGTGACAAGGTTTATGAATACATTCTTTTTCGAGGGAGTGACATTAAGGATTTGCAGGTCAAGTCCCTCTCTACATCTATCAAGGAGGAGCAGGTATTCAGTGATCCAGCTATTATCCAGTCACAATATTCTGAAGTGCCTTCAAGGTCTCATATGGCTTCAGTGGGTGGGAGAAGTTTGACAGAATCAATTCAATGGCAAGATACTCCTGCTATGACCGCTAGAGACATTCCTCTTCCTGTTGGGTTGCCTTCGCATCAATCTGCAACGTCGATGGGCCCATCAGATCTATCTTCTGTAATTCATGTTTCTGGTGCTCCTTCTTTCCCTACAACAGGGTATTGGCCAGAATATAGTGGGATATCAGGAACTAGCTCTCCTTCTCTGCTGCAGTGTGGTCCTTTTCAGTCCCCTTCAGGAGTGGCACCTTTAAATTCACAGAGCTGGGGCCAAACACCAGAAAGTCAGTTTCCTTCTTCAAAAGTGTGCGGGACTACTTTACCAGAGCATGGTGAACCTGTCTCATCTGTTACTGTTTCATCTCTTGTAAATCCGTCTTATGAATCTTCATCTTCCTCTTTACAAACTTCTGATTCTCTAGATGCTCCTCCTCTTTGGTCCTCTAAGACACCGTTGCCCTATCATTCTTCTGTGGCTGAATCAAACATGCCTTCATTTTCTTCACCGTTTCAAGGCATAAATTCTGTCAAAGATCAAATTCCTGGAAAAACTTATTCTTACATGGGATTATTTTTTCCTGGACAATCTGCCCATCATTCTGTTTCTTCATCAGTTGATTCTACTTCAGGCTCCTTGCTTAGACCTCCATCTTTTTTAACTCCAGATCAGTCTGCTCATTCTAGACAGAATTTTGTTTCTTTAGTACAGAACCAGATCCCTGATCAGAATCATATGGTTTCTCTGGCACCAACATCCTCTAGCTCCTCTTTTTTAGTACAGTCTCCAGAATTTCAAGCACCGTTGTGGCCTTCACCACCATTTCCAACTTCAGGACATAAGCCTCAGTACTCAGCTTCAAAGTTCAGTGAAGAGTTTGATTTTGAGGCCATGAACGAAAAGTTCAAAAAGGATGAAGTATGGGGTTCTCTTGGGAGGGCATCTAAGACAATTGAAGGACTGGAGGATAATGCTCCAACTGATAGCTTGGGTGATAGAGAGTATCATGGGTTTCAACCTAACCTAAACCCTAAGCCTGCATATAAGAAAGACGACTTTTTTGACACAATTTCATGTAACTCTCTCTCTCTCGGATCAAGGAATGGACAGAATCGCCTATCTGAGAGAATGAGGCTGGATTCTGAGACGTTTGGCAATTTTCACCGGAGTCCTACTATGGGTTATGGTGGCTATGGTGGTGGACGCGGTGGATATTACCGGAGTTCATACAATATGGGAAGGGGTTATAGCTATTATGGTGGAAGAGGGCATGGCAGGAATGTGCCTTTCCATTAG 1695 0.4395 MASDSGTKPAPASSSSSTAGESYIGSFISLISKYEIRYEGVLFHLDVRDSTIGLKSVRSFGTEGRRKDGPQVPPSDKVYEYILFRGSDIKDLQVKSLSTSIKEEQVFSDPAIIQSQYSEVPSRSHMASVGGRSLTESIQWQDTPAMTARDIPLPVGLPSHQSATSMGPSDLSSVIHVSGAPSFPTTGYWPEYSGISGTSSPSLLQCGPFQSPSGVAPLNSQSWGQTPESQFPSSKVCGTTLPEHGEPVSSVTVSSLVNPSYESSSSSLQTSDSLDAPPLWSSKTPLPYHSSVAESNMPSFSSPFQGINSVKDQIPGKTYSYMGLFFPGQSAHHSVSSSVDSTSGSLLRPPSFLTPDQSAHSRQNFVSLVQNQIPDQNHMVSLAPTSSSSSFLVQSPEFQAPLWPSPPFPTSGHKPQYSASKFSEEFDFEAMNEKFKKDEVWGSLGRASKTIEGLEDNAPTDSLGDREYHGFQPNLNPKPAYKKDDFFDTISCNSLSLGSRNGQNRLSERMRLDSETFGNFHRSPTMGYGGYGGGRGGYYRSSYNMGRGYSYYGGRGHGRNVPFH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0817 564 ProSiteProfiles FFD box profile. 479 494 IPR025761 -
Lele49g0817 564 ProSiteProfiles DFDF domain profile. 414 450 IPR025762 -
Lele49g0817 564 SMART FDF_2 420 521 IPR019050 -
Lele49g0817 564 MobiDBLite consensus disorder prediction 455 477 - -
Lele49g0817 564 SUPERFAMILY Sm-like ribonucleoproteins 22 95 IPR010920 -
Lele49g0817 564 MobiDBLite consensus disorder prediction 207 237 - -
Lele49g0817 564 Pfam FDF domain 421 519 IPR019050 -
Lele49g0817 564 Gene3D - 13 99 - -
Lele49g0817 564 SMART LSM14_2 17 117 IPR025609 -
Lele49g0817 564 MobiDBLite consensus disorder prediction 1 20 - -
Lele49g0817 564 CDD LSm14_N 20 94 IPR025609 -
Lele49g0817 564 PANTHER SCD6 PROTEIN-RELATED 17 559 - -
Lele49g0817 564 ProSiteProfiles TFG box profile. 501 521 IPR025768 -
Lele49g0817 564 Pfam Scd6-like Sm domain 23 96 IPR025609 -
Lele49g0817 564 MobiDBLite consensus disorder prediction 207 253 - -
Lele49g0817 564 FunFam Trailer hitch, isoform C 17 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0817 Lele-ChrLele49 5013989 5018169 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0817 49 5013989 5018169 Lele49g0817 49 5013989 5018169 ECH
Lele49g0817 49 5013989 5018169 Lele51g0840 51 5115098 5126458 hybridization
Lele49g0817 49 5013989 5018169 Lele52g0841 52 5398636 5403419 hybridization