Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0813 ATGTTTCGCTTCCCTACAGTGCCGCAAGTTCAGCAAGAGATGGCCGATCGGTTAACTCGTATAGCTATCGTCAGCGACAGGTGCAAACCTAAGAAGTGCCGCCAAGAGTGCAAGAAGAGTTGTCCTGTCGTGAGAACCGGTAGATTGTGTATTGAGGTTACTGACAAATCTAAAATTGCTTACATATCCGAGGAACTGTGCATTGGATGCGGTATCTGTGTCAAGAAATGTCCATTTGAAGCCATTCAAATTATCAACTTGCCAAAGGACCTGGACAAAGACACTACTCATAGATATGGTCCTAACACTTTTAAATTACATAGGTTACCAGTACCTAGGCCAGGTCAAGTGCTTGGTTTGGTTGGAACGAATGGAATTGGAAAGTCCACTGCTCTTAAAGTTCTTGCTGGAAAATTGAAACCTAACTTGGGCCGTTTCAATAACCCACCTGACTGGCAAGAAATCTTAACCTATTTTCGAGGATCTGAACTGCAAAACTATTTCACTCGCATCCTTGAAGATGATTTGAAGGCCATTATAAAGCCTCAATATGTTGATCACATCCCTAAAGCAGTACCAGGGAATGTGCGGGAGACGCTGGACCAGAAAAATGAGAGAGATATGAAGCAAGAACTTTGTAATGATCTTGACCTAAACCAGGTTATAGATCGTAATGTTGCTGATCTTTCAGGTGGGGAGCTCCAAAGGTTTGCCATTGCAGTTGTTGCCATCCAGAATGCTGAAATATACATGTTTGATGAACCTTCTAGTTACCTTGATGTAAAACAGAGGCTGAAAGCTGCCCAAGTTGTTCGATCTTTGCTCAGGCCCAATAGCTATGTAATTGTTGTGGAGCATGATCTTAGTGTGTTGGACTATTTGTCAGACTTTATTTGCTGCTTATATGGCAAACCCGGTGCATACGGAGTTGTAACACTTCCTTTCTCAGTCAGAGAAGGAATTAACATCTTCTTGGCTGGTTTTGTCCCAACAGAAAATCTGAGGTTCCGGGATGATTCTCTCACCTTCAAGGTTGCTGAGACTCCACAAGAGAGTGGCGATGATGCTCAAACATATGCTCGATACAAATACCCGACAATGACCAAAACTCAAGGAAATTTCAAGCTTCGTGTAGTTGAAGGAGAATTTACTGATTCTCAGATTGTTGTGATGCTGGGTGAGAATGGGACGGGAAAGACAACATTTATTCGTATGCTGGCTGGTTTATTGAAACCTGACAGCATAGAAGGTGGCTCTGATACAGAAATGCCCGAGTTTAATGTGTCATACAAGCCTCAGAAGATTAGCCCAAAGTTCCAATCAACAGTCAGACACTTGCTCCATACAAAAATACGTGATGCATACACACACCCGCAGTTTATCTCAGATGTGATGAAGCCACTTCTCATTGAACAATTAATGGACCAAGAAGTTGTTAATCTTTCCGGTGGAGAGTTGCAAAGAGTTGCATTATGCCTATGTCTTGGAAAGCCTGCAGACATCTATTTGATAGATGAGCCTAGTGCATATCTTGATTCAGAGCAGCGTATTCATGCTGCCAAAGTCATCAAGAGGTTTATCCTCCATGCAAAGAAAACTGCGTTTGTTGTTGAGCACGATTTCATCATGGCAACATATCTTGCTGATAGAGTTATTGTTTATGAGGGATCTCCTTCAGTTGACTGTATTGCTAATTCGCCACAATCATTGTTGACTGGGATGAACCGATTCTTATCACACCTGGATATCACCTTTAGAAGAGATCCAACTAACTACCGCCCAAGGATTAACAAACTAGATTCAACCAAAGATCGGGAACAGAAATCAGCTGGCTCATACTATTACCTTGATGACTAA 1857 0.4216 MFRFPTVPQVQQEMADRLTRIAIVSDRCKPKKCRQECKKSCPVVRTGRLCIEVTDKSKIAYISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAVPGNVRETLDQKNERDMKQELCNDLDLNQVIDRNVADLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQESGDDAQTYARYKYPTMTKTQGNFKLRVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDSIEGGSDTEMPEFNVSYKPQKISPKFQSTVRHLLHTKIRDAYTHPQFISDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIHAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGSPSVDCIANSPQSLLTGMNRFLSHLDITFRRDPTNYRPRINKLDSTKDREQKSAGSYYYLDD 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0813 618 Gene3D - 9 344 IPR027417 -
Lele49g0813 618 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 20 49 IPR007209 -
Lele49g0813 618 ProSitePatterns ABC transporters family signature. 481 495 IPR017871 GO:0005524|GO:0016887
Lele49g0813 618 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 82 327 IPR003439 GO:0005524
Lele49g0813 618 Gene3D - 348 616 IPR027417 -
Lele49g0813 618 CDD ABC_RNaseL_inhibitor_domain1 90 344 IPR034348 -
Lele49g0813 618 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 67 78 IPR017900 -
Lele49g0813 618 Pfam ABC transporter 379 509 IPR003439 GO:0005524
Lele49g0813 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 301 IPR027417 -
Lele49g0813 618 FunFam ATP-binding cassette, sub-family E, member 1 14 344 - -
Lele49g0813 618 Pfam ABC transporter 114 256 IPR003439 GO:0005524
Lele49g0813 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 554 IPR027417 -
Lele49g0813 618 ProSitePatterns ABC transporters family signature. 229 243 IPR017871 GO:0005524|GO:0016887
Lele49g0813 618 PRINTS ABC transporter family E signature 152 168 IPR013283 -
Lele49g0813 618 PRINTS ABC transporter family E signature 168 194 IPR013283 -
Lele49g0813 618 PRINTS ABC transporter family E signature 36 51 IPR013283 -
Lele49g0813 618 PRINTS ABC transporter family E signature 119 144 IPR013283 -
Lele49g0813 618 PRINTS ABC transporter family E signature 91 111 IPR013283 -
Lele49g0813 618 PRINTS ABC transporter family E signature 64 88 IPR013283 -
Lele49g0813 618 SMART AAA_5 385 558 IPR003593 -
Lele49g0813 618 SMART AAA_5 114 306 IPR003593 -
Lele49g0813 618 FunFam ATP-binding cassette sub-family E member 1 346 616 - -
Lele49g0813 618 CDD ABC_RNaseL_inhibitor_domain2 362 611 - -
Lele49g0813 618 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 14 618 IPR013283 -
Lele49g0813 618 Pfam 4Fe-4S binding domain 61 83 IPR017896 -
Lele49g0813 618 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 356 581 IPR003439 GO:0005524
Lele49g0813 618 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 58 87 IPR017896 -
Lele49g0813 618 SUPERFAMILY 4Fe-4S ferredoxins 23 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0813 Lele-ChrLele49 4957721 4962109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0813 109 291 Calmodulin-binding Proteins AT2G36910 27.461 1.15e-06 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0813 49 4957721 4962109 Lele49g0813 49 4957721 4962109 ECH
Lele49g0813 49 4957721 4962109 Lele51g0835 51 5053514 5057335 hybridization
Lele49g0813 49 4957721 4962109 Lele52g0836 52 5338821 5342636 hybridization