Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0804 ATGAAAGGGCGCTCGCACCGGCTGCAGAGTTCGGACCCTCCCGACGACTGGATTGATGGTTCTTGGACTGTGGATTGCGTATGTGGTGTGAATTTTGACGATGGGGAGGAGATGGTGAATTGTGACGAGTGCGGTGTGTGGGTGCACACGCGTTGCTCGCGATATGTTAAAGGAGATGATATGTTCGTATGCGATAAGTGTAAGAGCAAGATTAATCGATCTGATACGGAGGAAACGGAGGTGGCCCAGTTGTTAGCTGAGCTCCCTACGAAGACCGTGAGAATGGAGAATTCATTTGCACCCATCGGAGCTCCGCGGCGTCCTTTTAAGCTTTGGACAGACCTGCCTATGGAGGAGAGGGTGCACATTCAAGGAATTCCTGGGGGCGATCCTTCCCTTTTTGGTGGGATATCCTCTATTTTTAATCGGCAGCTATGGAAATGTACTGGGTATGTTCCCAAACAGTTTAATTTTCAGTATAGGGAATTTCCCTGCTGGGATGAGAATTCCCCTAGGGAAGAGGATAATGAGAACCCTATCAATAAGGGGGCTGGAGTTCTATTTTCCTTGTCAAAAGAGAGTATATCGGCCACCCCTATTGCAACTTTAGTTGACACGAGAGCTAGGGAGGGAGAAGATGGTTCTGACCTGAAGAAGTCTCTGAAAGAGATGAAAAAGAGTGATAGTGAAGATGCGGAGGCCATAAGGCGTGCCCAGAATGGCATGAAGAAGGAGAGAAGTTTGCTTCGGTCTGTTGTGCATTCAGGTAAGCAGAAAAAAGAAGAGTTGGGAACACCCAAAGATCGCAGTGGGAAGAAGAGGATTAAAACTTCGGACAAAGAGGTAGATCCCAAGAGGAGAACTTCACATACTTCGAAAACAGCATTTACACCCACCAGTGATGCAAAACAATTGGAATTTTATGAAGACAGAGGTGTGAAGAATTTCAAGATTGATACCTGGAGCGTAAAGAATAAAACTTTGAAAGGCATTGCGGTTCAGGAACACGTTTCAAATAATTACTCTGTTGTGGATACCATTATGGAGGAGCCAAATATCAACTCGGCAACTACTGAGGATTCTTCAGAAGCCTTATATCCTGACGTGACAAGACATAGTTTTTCAGTTGGACCAGAAATAGCAGAAGAGAAAACTGAAAAAGCTCCTTCTGTTTCTGAAATTTCTTCCAAGACTGATGATAACATTTCACCATATTTAAAGAATAATTGTGCTGGAAATGCTTCAATTAAAGAACAGGAGGGAGATGGCCTGGCAGTTGATAATGCAGATGACAGTATAGTAGTATCAAGCTCAAGAAGTCCTGCAGAAGAAGATCTTTGTGGTCCAGCACCAGAACCCAGGGATAACAAGGATTCCCAAGATTTTGACATTGAAACGTATCCTAGCTCTGGACAGAGCAATCTTAAGGTGAAGAGAGAAGGGGATAATGATAATTTTGGGAAGCATTTGATTTCTCATGCTTCTAGCATGAGTGATCTGAAAAGTGATGGGAAACAGCCTAAACGCAAATATGACCATGTTAATGATAGTGTGGTGACCAATTCATCCTATGAAAATAAGGTGGAAGACAGTGACAGAAAATCTGAAGTAATCATTGATTGCCATACCAATAATTCTGAGGAATTATCATGTCATTTTGGTCCTGTAAAACAAGAAATGGCAGGATCTGAAGGTCCCATGGAAACCCAGAAGGGTTTTTTAGAAATAGAAGATGGTTCTGGCTATGCTGAAGATCCATCAAAATCTGAAACTACATTGTGTCCTCATAAAATGTTATCATGTCTTGGGAAGTCATCCTTAAGTTCCTCAACTATGAATTCCAAAATTCCTCCTAGTGACCAAAAATCTGAACAGACTGAAATTCCTAATCCTCCTGTCAAGCATGGAGTAACGGCAGATTGCAACGTGTACAATAAGAAAGAAAGTAATCAAAATGATATTGTGAGGGATGAAGTTCCTAGGAAGTCTCAAAAAGAACGTCTGAAATCATCTTCAAATTCTAATTTGAAAGCAATGCATTCAAGCAAAAGTGCACAAAATGCGGTTTTAAGGCAAGTCAATGCAGATTCAAAAGATTTTGTTAACAGTTCATCTTCTAAAGCATCTTTGGTTCACCCAACTGGAACTAATTTAGGCTTGAGCGAGGCTGATGAATCATTACTGCACCAAAAGTCTTTACAAGCCCCAAATAAGATTTCGTCTTCGGTACCACAGAGAGGGGAAAAGATTAATCAGACAAACTCCCAACCTTCCTCTAAGGTGAACCAGAATCACGTGCCATCACCTTCGCCAACATCTAATTCTTCTGCAATGCTAAGTGATGAGGAGCTTGCACTACTATTGCATCAAGAACTAAATAGCTCTCCCCGAGTACCTCGGGTACCTCGAGCACGTCATGTGGGTAGCTTGCCACAGCTAACTTCTCCTAGTGGTGCAAGCATGCTATCAAAGCGCACATCATCTGCTGGAGGAAAGGATTATTGTTTGTTTTCTCGGCGAAAATGCAAGGATGCATCTAGAGATGGGCATTGCAGTTCCCGTGAGCTTGAAGATGAAGCTAAAAGGATAGAGAATGCATCATCTTCCCTTGATCAGAAGAAAAAAGATACGGAATGTGTGGAAGATGCTTCTGTAACGGAAGAAGGCCACATATCTATGACAACCATAAATTCTACAGCAAAGAATGTTGCTCCTGCCTCTGCTGCCACTGCAAATAGTGGTTCAGCCTCCCCTCCTGAGGATCGAAACTTACCGTTCATACGCAACTCACCTAAAAATATATCTGATGATGATAATGGAACTGCTGGAAGGCCAGCCCATCGCACTTTGCCTGGCTTGATCAATGAGATTATGAGCAAAGGTCGTCGGATAACATACGAGGAACTCTGTAATGCTGTGCTGCCGCACTGGAATAACTTGAGGAAGCATAATGGAGACCGCTATGCTTACACAAGTCACTCTCAAGCTGTTCTTGATTGTTTGAGGAACCGGCATGAATGGGCAAGGTTGGTTGACCGTGGTCCAAAGACAAATTCTACTAGGAAAAGGCGAAAGTTTGATGAAGAATCTGATGATAATGTAGCTGGCAAGGGCAGAACTGCAAAAGGTGGTGAAGGGAAGAATTTTGAGTTGCAGAAAGAAGAGTTCCCTAAAGGCAAGCGTAAGGCACGGAAGCGCAGGCGTCTTGCTCTTCGGGGGATAGCAGTCAAGGATGCCCGGAGAAGAAAGGCTGATTCACTAACTGACGAAGATGTCGGCCCATTCTCCAATTCTAGTGAGGAGAGCGAGTTTAGCGAGGATGAAATTCAGGATGGCAGAACAGGTCAAGTGGGAAGTGAAGCTTCTTCTAGTTCAGACGAGGAAGCTTCTTTGGATTCGTGGCTCATGAAAGACCGAGGAGGCGGCAAGCTGTTTAGGCAAGTGGAAGGATGTTTAGTTATTTACTATGAAATCCTGGCCCTTGCTGCCTGCCGTGACCTGTCTTGTGGTGGGTGGATGCTCCATTTCGTTGTCTTCTCCCAAAGCAACCTTCGTCACAAGACTTGA 3567 0.4382 MKGRSHRLQSSDPPDDWIDGSWTVDCVCGVNFDDGEEMVNCDECGVWVHTRCSRYVKGDDMFVCDKCKSKINRSDTEETEVAQLLAELPTKTVRMENSFAPIGAPRRPFKLWTDLPMEERVHIQGIPGGDPSLFGGISSIFNRQLWKCTGYVPKQFNFQYREFPCWDENSPREEDNENPINKGAGVLFSLSKESISATPIATLVDTRAREGEDGSDLKKSLKEMKKSDSEDAEAIRRAQNGMKKERSLLRSVVHSGKQKKEELGTPKDRSGKKRIKTSDKEVDPKRRTSHTSKTAFTPTSDAKQLEFYEDRGVKNFKIDTWSVKNKTLKGIAVQEHVSNNYSVVDTIMEEPNINSATTEDSSEALYPDVTRHSFSVGPEIAEEKTEKAPSVSEISSKTDDNISPYLKNNCAGNASIKEQEGDGLAVDNADDSIVVSSSRSPAEEDLCGPAPEPRDNKDSQDFDIETYPSSGQSNLKVKREGDNDNFGKHLISHASSMSDLKSDGKQPKRKYDHVNDSVVTNSSYENKVEDSDRKSEVIIDCHTNNSEELSCHFGPVKQEMAGSEGPMETQKGFLEIEDGSGYAEDPSKSETTLCPHKMLSCLGKSSLSSSTMNSKIPPSDQKSEQTEIPNPPVKHGVTADCNVYNKKESNQNDIVRDEVPRKSQKERLKSSSNSNLKAMHSSKSAQNAVLRQVNADSKDFVNSSSSKASLVHPTGTNLGLSEADESLLHQKSLQAPNKISSSVPQRGEKINQTNSQPSSKVNQNHVPSPSPTSNSSAMLSDEELALLLHQELNSSPRVPRVPRARHVGSLPQLTSPSGASMLSKRTSSAGGKDYCLFSRRKCKDASRDGHCSSRELEDEAKRIENASSSLDQKKKDTECVEDASVTEEGHISMTTINSTAKNVAPASAATANSGSASPPEDRNLPFIRNSPKNISDDDNGTAGRPAHRTLPGLINEIMSKGRRITYEELCNAVLPHWNNLRKHNGDRYAYTSHSQAVLDCLRNRHEWARLVDRGPKTNSTRKRRKFDEESDDNVAGKGRTAKGGEGKNFELQKEEFPKGKRKARKRRRLALRGIAVKDARRRKADSLTDEDVGPFSNSSEESEFSEDEIQDGRTGQVGSEASSSSDEEASLDSWLMKDRGGGKLFRQVEGCLVIYYEILALAACRDLSCGGWMLHFVVFSQSNLRHKT 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0804 1188 SUPERFAMILY FYVE/PHD zinc finger 14 72 IPR011011 -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 669 686 - -
Lele49g0804 1188 PANTHER UNCHARACTERIZED 1 1123 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 206 290 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 735 777 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 605 628 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 1082 1130 - -
Lele49g0804 1188 SMART PHD_3 25 68 IPR001965 -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 906 948 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 391 405 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 206 298 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 1012 1058 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 448 462 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 436 514 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 1115 1130 - -
Lele49g0804 1188 Coils Coil 853 876 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 605 686 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 378 405 - -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 1012 1067 - -
Lele49g0804 1188 ProSitePatterns Zinc finger PHD-type signature. 26 67 IPR019786 -
Lele49g0804 1188 MobiDBLite consensus disorder prediction 650 668 - -
Lele49g0804 1188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 75 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0804 Lele-ChrLele49 4879744 4886353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0804 24 67 PHD Transcription Factor Family AT5G22260 42.553 7.30e-06 48.5