Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0765 ATGGGGAACGCGAAACGATGGACGGTGACCTATACGAAGCAAATCAAGCAAAAACGCAAAAAGTACCAAGATGGTTTTCTAGAACTCCAGGATTCAACCAACAAGGTTATGCTTTATGATGAGTGCGAAAAACTCTTGGAATGTAAGCTATTGAAGAGTGATGAAACCGTTACCTCTGGTGAAACTCTGACGTTCAATGGCTATCTTGTTGACGTCGGTGATCCTGAGGGAGATAATAACCCTATTTCTGATTCACATCGCTGTATAGTAGTTAAAATTGCAGAGTTTAAGAAGAGAGAGCTTCTTAAGTATGGATCACCAAAGATCAGTCCGGAAACAACAAAATCCAACACAACAGAAGTGACTCAAAAGGCAAAGAAGTTCCGTGATGGTTTTTTAAAACTTGTGGTTTGTAGATTCAATAGTAGACAGGGAATGCTGTTTGATGCAAGCAAGAAACTTTTAGACAGCAAATTCCTTAAGAAAGATGACATAATTAGGCCGGTCGAATCACTTGCATTTTATGCATATTTGGTTGACGTTGGTGAGAATCAAGGAAATCATGAACCAGATTCAAATGATCAAGAAAAAGCGGCTGTCCTGTGTGATTTGAACAAAACACCAATAGAGTGCAGATTCTTGAAGAAAGATGAAGTTATAAGACCTGGTGAATCCATATATTTCGATGGCCATTTTGTCGATGTAGAAGATCCCAAAGAAAGCCATCAATGTCCAATGAATTCTGATGAGAAAGGAACGGATGATAATTTTGTTCAGGGAAAACAAGTAAGATATGAACAGAACGGCTGTCTAAAGGCCGACCCAATTGTCGTCAAAGCCCATCAAATATTGTCTCTTTTACAAGACCGTGTGGCTCCTAAGAGCAGAATTACAGTAGCAAGTGGTGGTGCCAGTTTGCAATTCAGGGATATCTTCGGAAATTCCCACCAGCCCGAAACATGCAAGGAAGCTCAGCCGAATACGAGTGAGGCAGTCTTAGATTTTTCTAAGTCAAGTTTGGGTGCTCATTCATCTTATTCTGTTACCAGCGAAGGTGAGAGTGATGACGATGAGTTCTCGAGTACAACGGATATGAATGATTGCCCAAGCTTTGGCCTCGGGTTTTCACAGGGTAAGCTTCTCGAACTCGAAACAAATAAACAAAGCGAAAAAGGGGCTCATCGGCTTTTGTCCGATTCACAAAAAGCTCTCGTCCAGGAAGCGGCTTCTCTCTCTTCCCCTCCTCACTTTCTTCCCACCACTGCTCCTTCAACTACCTCTTATTCCACTCCTTGTCGTTTGGATCTGACGCTTCAGTTCCTTGACACTCTTCCAAAGGTTTTATTTGATGAAGAATTGAAAACAAGAGATTCACAATGTTGCATATGTCTGGGAGAATTTGAGATAAAAGAAGAGGTATTACAGATTCCTGAGTGCAAGCATGTATTTCACAGAGAATGCATTTACCAATGGCTTCATTCACACACCACTTGTCCACTGTGTAGATGTCGTATCATCCCACCCACCAAGTTTCTGAATCCACCGCCCCTCCGTCCTCCTCCTCCTCCTCTTGCAGATGAAGCTTCTTCTTCTTCTTAA 1599 0.419 MGNAKRWTVTYTKQIKQKRKKYQDGFLELQDSTNKVMLYDECEKLLECKLLKSDETVTSGETLTFNGYLVDVGDPEGDNNPISDSHRCIVVKIAEFKKRELLKYGSPKISPETTKSNTTEVTQKAKKFRDGFLKLVVCRFNSRQGMLFDASKKLLDSKFLKKDDIIRPVESLAFYAYLVDVGENQGNHEPDSNDQEKAAVLCDLNKTPIECRFLKKDEVIRPGESIYFDGHFVDVEDPKESHQCPMNSDEKGTDDNFVQGKQVRYEQNGCLKADPIVVKAHQILSLLQDRVAPKSRITVASGGASLQFRDIFGNSHQPETCKEAQPNTSEAVLDFSKSSLGAHSSYSVTSEGESDDDEFSSTTDMNDCPSFGLGFSQGKLLELETNKQSEKGAHRLLSDSQKALVQEAASLSSPPHFLPTTAPSTTSYSTPCRLDLTLQFLDTLPKVLFDEELKTRDSQCCICLGEFEIKEEVLQIPECKHVFHRECIYQWLHSHTTCPLCRCRIIPPTKFLNPPPLRPPPPPLADEASSSS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0765 532 MobiDBLite consensus disorder prediction 344 363 - -
Lele49g0765 532 SUPERFAMILY RING/U-box 438 513 - -
Lele49g0765 532 Pfam Protein of unknown function (DUF2439) 118 189 IPR018838 -
Lele49g0765 532 Pfam Protein of unknown function (DUF2439) 5 77 IPR018838 -
Lele49g0765 532 Pfam Ring finger domain 459 502 IPR001841 -
Lele49g0765 532 PANTHER ZINC FINGER GRF-TYPE CONTAINING 1 200 402 - -
Lele49g0765 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 508 IPR013083 -
Lele49g0765 532 ProSiteProfiles Zinc finger RING-type profile. 460 502 IPR001841 -
Lele49g0765 532 SMART ring_2 460 501 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0765 Lele-ChrLele49 4638366 4648494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0765 420 507 C3H Transcription Factor Family AT4G10150 45.455 5.17e-21 90.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0765 49 4638366 4648494 Lele49g0765 49 4638366 4648494 ECH
Lele49g0765 49 4638366 4648494 Lele51g0789 51 4765520 4772091 hybridization
Lele49g0765 49 4638366 4648494 Lele52g0792 52 5017255 5023404 hybridization