Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0753 ATGGAAGCGGATTTCGTCCCCAATGGCATGTTCATAGAAGAAACCTTTGAGCCCGATGATAATGCGAACAATGATAATTTATTTATTGAAGGGGAAAAATGTGGAATTTGCATGGATATTGTCATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGTTTTGCTTGCATTGACAACTGGGCTTCTATCACAAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTTATCACATGTGTTCCAGTATATGATACCATTGGAAGCAATAAAATCGAAGATGACATGTTATCCAGAGATGAAGACTGGTCCATTGAAGGGAAGAATAACACACTGTCCTTTCCCTCATACTATATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGGCTGCAAAACTCGAAGTGGATCAGCAACTATTGAAGGTGATTTGAGCCTTGATACATCAATTGCTTGTGATTCATGTGATGTATGGTATCATGCTTTTTGTGTGGGATTTGATCCTGAAGGTACATCTGACGGCACATGGTTATGCCCAAGATGTGTGCCAGATAAAGTTACTGAAAAGATGGATGCAAGTTCATTAGAGAAGACAACCATGGAAATTAACCCAGAAAATGGTGACAAGGAATGTCAGGGTGATGAATCTTTTTCGGGAAAAGTTTCTGTATCTGTTGCTGATGCTGGAGAGACAGCTGTTGTTGTCTCTTTGGTTGAAAAAAACCAATGGGTTCCGATATCAAGAGAGAAGGGTCAGTCACCCCTTGAAGCTAGCAAGGATCCAATGACTGAATCATGTGCTTCCATATCTGACGCAAATAATCACCAAAGTAATACAGAGAAGACTATTAATTCACCAAGGGAGCAACAGGAGCTGGAGCTGTCCTTATCGCACAATGGGGTTTGTAGCTTGTCCTCTAACAACTTAAGGCCTGATAATTTGAAAAATGGCACTTATGGAGATAGGAGTGATCCAAGCAGCTTAAGCGGAACCGAGATATTAAATGAATCCCATGACAAAGCTAGTACATCTAGAAATGGATCTGATATGGGTCTTCATCTCGGTTTGTCAGTTGGCTCCTTTTTATGTGTTGATGACACAGACATGAATGCTACAAGAGATCAGGAAACTGATCTGCAGCAGTCAAGTTCAGAAGAATTTATTTTGAAAGGAGATGAAATGGAACCAAAAGCTCTTATGGACAGTGCTGGAGCAACAGGGGAAAAGAGAAAGCATGCTGATTACAGTAATGATGAGGTTCACATAGAAGTTGATAGAGATGCCGAACACAAACCTGAAGTTGAAGTACAAAAGAAACTTAGAACTGACGGCAGTCTACTGATTAATCATGGGAACGTAGCAGGTGCTCCTCTTTCGGATGATACTAAAGCAAACCCTTCTACTACACCCATTTCCAGACACGATGATGAACAAAATCGTTCAACAAAGGAGAATGCTGCATCAGATATAATGAGTATAGTTAAAGGCACGAAGTGGAAGCCTTCAAAGGGAATTTCTGGCTCCAGATCTTGTAATAAGTTATCTAAAAACAACGAAAATATGGCGGGTTTGAGGGTAAAAAAGATCATGAAGAGAGCTCCAGATCAAGGGGAGTCATCCTTAGTTCAAAACCTAAGGGAAGAAATTAGAGAAGCTGTCCGTAACGAATCCTCTAAAAATTTTGAAGAAAATCTTTTTGATACAAAGCTTCTTGCAGCATTCAGGGCTGCTGTAGCAGGGCCTAAAACTGAGCCTGTAAATAAGCTGCCCCCTATGGCTTTGAAGACAAAGAAGTCAATGTTGCAGAAAGGAAAAGTTCGTGAACATCTAACTAGGAAAATTTTTGCAGCATCAAATGGAAGAAGAAAGCGTGCATGGGACAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCAACGAAGCCTGAAAAGATTGAAACTTTGAGGTCAGTTCTGGATCTTCTTAGAAATAGTTCAGAGAGTGAAGAACCGAAAGAGGGTCCTGAAGGTCAGGCCAAAAATTCTATTATTTCCAGGTTGTATTTGGCAGATACATCTGTTTTCCCACGAAAAGATGATGTCAAGCCACTTTCTGTCCTTGAAACTGCTGCTAACTCAGAGCAGAATAAAAAATCTAGCCTTTCAGGAAAAGCATCAAATCAGTCTCTTGATAATACTCCTATTAGAGCAAAAGAGATAAATAATGTTTTACCAAAGGCCAGAGATTACTCATCTGAAAATAAAGTAAATAAGAAGGTTGTACATAGCTCAGTTGGCGGTAATTCAGCTTCTGGTAAAGTACCTTCAAGCAGACACTCAGAAGGGGCAACAGGTTCTTGCCCCGGTGGCTCCAGAGTTGACTCAAAGGAGTCATGCTTTAAATCAGATTGTATAAAGAGTGACAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGAAAAACAGCTGCTGCGGGCAAGAAAATGACAAATGGCAATCAGGAAGATAATGCAATGCTTGAAGGAAATTATCCTTTACTGGCCCAATTGCCCGCGGATATGAGACCAGTATTATCGCCCAGTCGCCACAAAAAAGTTCCTATATCAGCAAGACAGGCACAACTTTACCGCCTGACTGAACACTTCTTGAGGAATGCAAATCTGTCGGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTGGCTGACAGATCAAACAGCAAGCTGGTGTATCTGAATCTCTGTTCACAGGAGCTCTTGCGCCGTTCAAATAATAGAAAATCCAATGGAGCAACAGATATAATTCCACAGGTCTCATCAGCAGTCCCTACTGATAGATCAGAACAAAATACTGATGATGATCTTTCAACTGACTCTGCAGTTCAAATAGCTCTTAAAAATGCTGGTCTTTCCTCTGATTCTCCTCCTTGTAGTCCAAGTGAGGAAAGAGAAATATCCAATAAAGAAGTTGATCTTTCAGGGCCTGATAATATCCTCGAACTGGATTTTCAACCAGAGATGGATATTTATGGGGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCAGGTGTTGCTAGAGGCTTAAATTCACGAGAAGAAGAAAGCGAGTCAAAAATGAAACTCGTTTTCTCTACCATGAATTTGAAGAATTCAGATACTGTTTTGGATAGTATGGACTCTGGGAGTTTGGAAAACAATGAAGTCCCACGAGATCCCTCCTGCTCATCGAATCATGATGATGCGGCTACGGCCAACACGGACCCTCCAATTAATGCAGAGATTGGCAATCCTTCTGCTCCTTCTGAGGCCCTTCTCAGTGAGCCATGTGATGCAGAATGCGAAGAATTATACGGTCCAGAGAAAGAACCACTAACAAAAATATTTCTGAATGAGGAATTTATAACATTACATGAAGAGGGCAAGTCAGGAACTAAAACTGAAGGCAATGGCTCTCATAATAAAGAACAAGCATCAGACCAAGGAGTAAATGCATCTGAATCTGGGAATGACAAACTTGAAAAGAATATGCTGGTCACTGCTGTCGCTGACAATTCATCTAATGCATCCGATACTAGTGAAAATTTAAAGAGGAAGGGAGAAAAATCTGACACTGCTGCCGAGCAGTCTGACTCTGCAAATCATGTAGTTAGAAAGGTTGAAGCTTATGTGAAGGAGCATATCAGGCCACTGTGCAAGAGTGGTGTGATCACAGCTGAACAGTACAGGTGGGCTGTCACAAAAACAACGGAGAAGGTTATGAAGTACCATTGCAAAGCCAAGAATGCCAATTTCCTCATAAAGGAAGGCGAGAAAGTGAAGAAACTCGCAGAGCAGTATGTTGAAACAGCCCAACATAATAGGAAAAATTGA 3900 0.41 MEADFVPNGMFIEETFEPDDNANNDNLFIEGEKCGICMDIVIDRGVLDCCQHWFCFACIDNWASITNLCPLCQNEFQFITCVPVYDTIGSNKIEDDMLSRDEDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKTRSGSATIEGDLSLDTSIACDSCDVWYHAFCVGFDPEGTSDGTWLCPRCVPDKVTEKMDASSLEKTTMEINPENGDKECQGDESFSGKVSVSVADAGETAVVVSLVEKNQWVPISREKGQSPLEASKDPMTESCASISDANNHQSNTEKTINSPREQQELELSLSHNGVCSLSSNNLRPDNLKNGTYGDRSDPSSLSGTEILNESHDKASTSRNGSDMGLHLGLSVGSFLCVDDTDMNATRDQETDLQQSSSEEFILKGDEMEPKALMDSAGATGEKRKHADYSNDEVHIEVDRDAEHKPEVEVQKKLRTDGSLLINHGNVAGAPLSDDTKANPSTTPISRHDDEQNRSTKENAASDIMSIVKGTKWKPSKGISGSRSCNKLSKNNENMAGLRVKKIMKRAPDQGESSLVQNLREEIREAVRNESSKNFEENLFDTKLLAAFRAAVAGPKTEPVNKLPPMALKTKKSMLQKGKVREHLTRKIFAASNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLRSVLDLLRNSSESEEPKEGPEGQAKNSIISRLYLADTSVFPRKDDVKPLSVLETAANSEQNKKSSLSGKASNQSLDNTPIRAKEINNVLPKARDYSSENKVNKKVVHSSVGGNSASGKVPSSRHSEGATGSCPGGSRVDSKESCFKSDCIKSDKRKWALEVLARKTAAAGKKMTNGNQEDNAMLEGNYPLLAQLPADMRPVLSPSRHKKVPISARQAQLYRLTEHFLRNANLSVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLRRSNNRKSNGATDIIPQVSSAVPTDRSEQNTDDDLSTDSAVQIALKNAGLSSDSPPCSPSEEREISNKEVDLSGPDNILELDFQPEMDIYGDFEYDLEDEDYIGAGVARGLNSREEESESKMKLVFSTMNLKNSDTVLDSMDSGSLENNEVPRDPSCSSNHDDAATANTDPPINAEIGNPSAPSEALLSEPCDAECEELYGPEKEPLTKIFLNEEFITLHEEGKSGTKTEGNGSHNKEQASDQGVNASESGNDKLEKNMLVTAVADNSSNASDTSENLKRKGEKSDTAAEQSDSANHVVRKVEAYVKEHIRPLCKSGVITAEQYRWAVTKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYVETAQHNRKN 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0753 1299 SMART PHD_3 132 184 IPR001965 -
Lele49g0753 1299 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Lele49g0753 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 191 IPR013083 -
Lele49g0753 1299 PANTHER RING FINGER PROTEIN 41, 151 115 1290 - -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 934 996 - -
Lele49g0753 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 113 IPR013083 -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 961 988 - -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 1190 1222 - -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 755 782 - -
Lele49g0753 1299 SUPERFAMILY RING/U-box 25 79 - -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 251 334 - -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 454 488 - -
Lele49g0753 1299 Pfam PHD-finger 149 185 IPR019787 -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 709 790 - -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 1203 1222 - -
Lele49g0753 1299 SMART ring_2 124 183 IPR001841 -
Lele49g0753 1299 SMART ring_2 34 72 IPR001841 -
Lele49g0753 1299 SUPERFAMILY FYVE/PHD zinc finger 149 189 IPR011011 -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 1150 1178 - -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 1156 1178 - -
Lele49g0753 1299 ProSiteProfiles Zinc finger RING-type profile. 34 73 IPR001841 -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 1065 1102 - -
Lele49g0753 1299 Pfam Ring finger domain 33 73 IPR001841 -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 265 334 - -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 1065 1114 - -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 709 734 - -
Lele49g0753 1299 MobiDBLite consensus disorder prediction 934 953 - -
Lele49g0753 1299 ProSiteProfiles Zinc finger PHD-type profile. 66 186 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0753 Lele-ChrLele49 4572569 4581773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0753 29 76 C3H Transcription Factor Family AT2G39100 37.255 1.29e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele49g0753 PHD 1.7e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0753 49 4572569 4581773 Lele49g0753 49 4572569 4581773 ECH
Lele49g0753 49 4572569 4581773 Lele51g0778 51 4695405 4704644 hybridization
Lele49g0753 49 4572569 4581773 Lele52g0783 52 4950664 4951421 hybridization