Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0744 ATGGACCTGAACGCTGATATAGTCTTGCAATGGAACACACCAAACTGTGGAAACTGGGTAGCGAGGAAAGGCCGATGTGCGTTCTTGAAGGACAAGGGTCTCGAAATCGCTTGTTATTTACCACAGCAAGGTGGTATTTCAAAGTTTAAGAAGTATGGATTAGGCTTCGGCGTGGGAATACCTGGATTGCTGCGTGTGACTGTGGTCGTGTATTTGTGTAAGGGGAAGCAAAGAGAGAACGAAGAAGAGCGAAGGCAGAGGAGCGATATTGAACTGAATAATAATGTTGCAGGGCGGTCATCTGTGGTGGTGATGGGGCTTGATGCAAGTCCCATTGAAGCCTGTCTTCAACATCCCCCTCTTCCCCTTGTTTGTATCAGAGCTACATCAATAGGCAATAATTGGGATCATCTCTCTCAAATGACAATCTTATTATTATTAGCCTCTCTGTCGTTATTGGTGATAATCCAGTGCGTAAGTGGGGCTCAAGTAGAAGATTGCAAGAGCAATTCTTGTGGAGGAATCGAGATTAAGTTCCCTTTCGGTTTAAAAGAAGCCAACCAGAGTAGTCGATGCGGCTACCCTGACTTCAATGTTTCATGCAACAATCAGGGTGAGACCATCTTCACGTTACCAGATTCCGGCGACTTGGTGATCAAAGCCATCGATTACGCCTCACAAACTCTTTGGGTCAACGATCCAAATCAATGTCTACCCAGAAGGTTCTTGCAGGGTCTCGACCTTTCGGATTCGCCCTTCCGGTTCGACCCGGGCCTTTACAATCTCATCAACCTCACGTTCCTTCGTTGTCCTTCCAACCTCACGCAAAATTGGCTCACTTCAGTTCGTTGTCTTAAAGATCTCGCCAATTCCTCTTCCACTGTCACTTACTTCTGGAGGCCAACCATTCCTCCGCCCTTGAATGAATCTTGTGAGGTCATTAATTCTTCTGTTCCCTACCCGATTTCGAACATCGACCCGTGGTCTTTCTGGGTCGATATTGGCGATGATTTGCATTTGACGTGGGGCAGGCCCCGTTGTGGCCGCTGTGAATCTCGAGGACAAGATTGTGGGTTCGCTCAGGATATGGGTCTCCGAACCGGATGTTTCTCTCGTCCCCAAGAAAGCTCAGGTCTTCCAAGAGCTGTAAAATATGGGCTAACAATAGGAGTGGGAATACCCGGGCTCCTGTGTTTAATTGGGCTCATCTGTTACGTGTGTGGCAAGATAGGACAACGTCGCAATCTCAGGCCCAGCATAGATCTTCCCATCACATCATTTGTGGTCCAGTCCGGACCATTTAGAATGGGCCTCGATGGGTCCACAATAGAGAAGTATCCCATGACTCTTCTTGGAGAGAGTAGGCGGCTACCCAAGCCCAGCGACAGCATTTGCTCAATATGCCTGTCGGAGTATGAGCCCAAGGAGACCTTGAGAACCATACCCGATTGCAATCATTATTTCCATGCACGCTGTATAGATGAATGGCTCAAGATGAATGCCACGTGTCCAGTTTGCCGGAATTCACCTTCTCCCCCTTCAACTTCTTCATCCATGTCCCCTTCTTCTTCTTCCTTATCGTCTTCACATTAG 1593 0.479 MDLNADIVLQWNTPNCGNWVARKGRCAFLKDKGLEIACYLPQQGGISKFKKYGLGFGVGIPGLLRVTVVVYLCKGKQRENEEERRQRSDIELNNNVAGRSSVVVMGLDASPIEACLQHPPLPLVCIRATSIGNNWDHLSQMTILLLLASLSLLVIIQCVSGAQVEDCKSNSCGGIEIKFPFGLKEANQSSRCGYPDFNVSCNNQGETIFTLPDSGDLVIKAIDYASQTLWVNDPNQCLPRRFLQGLDLSDSPFRFDPGLYNLINLTFLRCPSNLTQNWLTSVRCLKDLANSSSTVTYFWRPTIPPPLNESCEVINSSVPYPISNIDPWSFWVDIGDDLHLTWGRPRCGRCESRGQDCGFAQDMGLRTGCFSRPQESSGLPRAVKYGLTIGVGIPGLLCLIGLICYVCGKIGQRRNLRPSIDLPITSFVVQSGPFRMGLDGSTIEKYPMTLLGESRRLPKPSDSICSICLSEYEPKETLRTIPDCNHYFHARCIDEWLKMNATCPVCRNSPSPPSTSSSMSPSSSSLSSSH 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0744 530 SUPERFAMILY RING/U-box 459 512 - -
Lele49g0744 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 512 IPR013083 -
Lele49g0744 530 Pfam Wall-associated receptor kinase galacturonan-binding 167 233 IPR025287 GO:0030247
Lele49g0744 530 ProSiteProfiles Zinc finger RING-type profile. 465 507 IPR001841 -
Lele49g0744 530 SMART ring_2 465 506 IPR001841 -
Lele49g0744 530 Pfam Ring finger domain 465 507 IPR001841 -
Lele49g0744 530 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 114 - -
Lele49g0744 530 Coils Coil 73 93 - -
Lele49g0744 530 MobiDBLite consensus disorder prediction 510 530 - -
Lele49g0744 530 CDD RING-H2_PA-TM-RING 465 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0744 Lele-ChrLele49 4521518 4525500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0744 161 512 C3H Transcription Factor Family AT2G46495 37.047 3.17e-56 190
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0744 49 4521518 4525500 Lele51g0764 51 4628606 4630546 hybridization