Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0723 ATGGCTGAGATAATTGCCGAAGTGCCCTTCGATCAAGTCCCGTCGAGGAAGCAGCGAAGCCGAAGGGCGTTGAAGGATAAAAATCCCTCAACCAATGATGTCAAATCCTTGGCCAAGAAGCTGCCCGATTCCTCCTCACCACCGGTTTCTATGGAATCAGACGCCGGAAAGGAGAACCAACCCAGCGCCTCTCAACCCCGCTCCTCACCCAAGATGGGAAAAGCTGCCTCCAAGAAACAGTCGAAGCAATCTTTTGAGAAAGATTTGCTAGAAATGCAGGAGATGCTGCAGAAGTTGCGCCTTGAGAAGGAGAAGACTGAAGAGCTCTTGAAGGTCAAAGATGAGATGTTGAAGCAGAAGGAAGAAGAGCTTGACGAGCGTGGTCGCCAGCAGGAGAAGCTTCAGATTGAGTTGAAAAAATTACATAAGCTCAAGGAGTTCAAACCCACCATGAATTTGCCTATGCTGAAAGACCAGGAGCAAGAAAAGGACAAGAAGAAGAAGAATGGATGTGCTGTGAAAAGGCCTTCTCCACCTTACATTTTGTGGAGCAAAGATCAATGGGTTGAGATTAAGAAAGCGAATCCAGAGGCAGAATTCAAGGAAATTTCAAACATGTTAGGGGCTAAATGGAAGACCATCAGTGAAGAAGAGAAACAGCCTTATGAGGAGAAGTATCTCATTGAGAAAGAAGCGTATCTGCGGGTAATCACGAAGGAGAAACGTGAAAGCGAAGCGATGAAGCTCCTAGAAGAGGAACAAAAGCAGAAGACTGCCATGGAATTGCTCGAACAGTACATGCTGTTCAAACAAGAAACAGAGAAAGAAAGCAAGAAAAACAGAAAAGAGAAGGATCCACTGAAACCAAAGCATCCTGTGTCAGCTTTCATCTTGTACACGAATGATAGGCGGGCAGCTATTCTTGCGGAGAACAAGAGTGTCTTGGAGGTTTCAAAGATTTCTGGTGAGGAGTGGAAGAAAATGACAGAAGAACAAAAGAGACCTTATGAAGAGATGGCAAGGAAGAACAAGGAGAAATATCTTCAAGAAATGGAGGTTTATAAACAGAGGAAGGATGAGGAGGCAACGAATCTCAGGAAGGAAGAGGAGGAGAAAACGAAACTTCAGAAAGAAGAAGCCTTGAAACTGCTGAAGAAGAAGGAGAAAACAGAAAATCTGATCAAGAAGTCAAAGAAGAAGAAACAGAGCAAGGAAGATAAGAATTGTGATCCTTACAAGCCAAAGAGACCCCCATCCTCGTTTCTGCTATTTAGCAAAGAAGCAAGGAAGAGCATACAGGAGGAACGACCAGAGATGAATAACTCAACGGTGACCTCACTTGTATCAGTGAAATGGAAGGAACTGAGCGAGGAAGAGAGAAAAGTGTGGAACGACAAAGCCGCGGAGGCAATGGAGGCATACAAGAAGGAATTGGAGGAGTACAATAAATGCATAGCAGCTAAGTTGGACCAGAAAACAGAAGAATGA 1488 0.4456 MAEIIAEVPFDQVPSRKQRSRRALKDKNPSTNDVKSLAKKLPDSSSPPVSMESDAGKENQPSASQPRSSPKMGKAASKKQSKQSFEKDLLEMQEMLQKLRLEKEKTEELLKVKDEMLKQKEEELDERGRQQEKLQIELKKLHKLKEFKPTMNLPMLKDQEQEKDKKKKNGCAVKRPSPPYILWSKDQWVEIKKANPEAEFKEISNMLGAKWKTISEEEKQPYEEKYLIEKEAYLRVITKEKRESEAMKLLEEEQKQKTAMELLEQYMLFKQETEKESKKNRKEKDPLKPKHPVSAFILYTNDRRAAILAENKSVLEVSKISGEEWKKMTEEQKRPYEEMARKNKEKYLQEMEVYKQRKDEEATNLRKEEEEKTKLQKEEALKLLKKKEKTENLIKKSKKKKQSKEDKNCDPYKPKRPPSSFLLFSKEARKSIQEERPEMNNSTVTSLVSVKWKELSEEERKVWNDKAAEAMEAYKKELEEYNKCIAAKLDQKTEE 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0723 495 Coils Coil 337 407 - -
Lele49g0723 495 SMART hmgende2 288 356 IPR009071 -
Lele49g0723 495 SMART hmgende2 172 242 IPR009071 -
Lele49g0723 495 SMART hmgende2 413 483 IPR009071 -
Lele49g0723 495 MobiDBLite consensus disorder prediction 149 175 - -
Lele49g0723 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 289 355 IPR009071 -
Lele49g0723 495 Pfam HMG (high mobility group) box 289 355 IPR009071 -
Lele49g0723 495 Pfam HMG (high mobility group) box 414 482 IPR009071 -
Lele49g0723 495 Pfam HMG (high mobility group) box 173 235 IPR009071 -
Lele49g0723 495 MobiDBLite consensus disorder prediction 1 89 - -
Lele49g0723 495 CDD HMGB-UBF_HMG-box 174 237 - -
Lele49g0723 495 Gene3D High mobility group box domain 157 239 IPR036910 -
Lele49g0723 495 Coils Coil 464 495 - -
Lele49g0723 495 MobiDBLite consensus disorder prediction 14 33 - -
Lele49g0723 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 173 241 IPR009071 -
Lele49g0723 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 414 482 IPR009071 -
Lele49g0723 495 Coils Coil 82 137 - -
Lele49g0723 495 MobiDBLite consensus disorder prediction 272 292 - -
Lele49g0723 495 MobiDBLite consensus disorder prediction 46 79 - -
Lele49g0723 495 MobiDBLite consensus disorder prediction 390 444 - -
Lele49g0723 495 MobiDBLite consensus disorder prediction 157 171 - -
Lele49g0723 495 MobiDBLite consensus disorder prediction 272 290 - -
Lele49g0723 495 SUPERFAMILY HMG-box 280 360 IPR036910 -
Lele49g0723 495 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 491 IPR044601 GO:0003677
Lele49g0723 495 CDD HMGB-UBF_HMG-box 289 352 - -
Lele49g0723 495 MobiDBLite consensus disorder prediction 355 378 - -
Lele49g0723 495 Gene3D High mobility group box domain 392 485 IPR036910 -
Lele49g0723 495 SUPERFAMILY HMG-box 410 483 IPR036910 -
Lele49g0723 495 CDD HMG-box 414 479 - -
Lele49g0723 495 Gene3D High mobility group box domain 272 366 IPR036910 -
Lele49g0723 495 SUPERFAMILY HMG-box 162 236 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0723 Lele-ChrLele49 4406891 4408959 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele49g0723 HMG_box 1.6e-18 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0723 49 4406891 4408959 Lele49g0723 49 4406891 4408959 ECH
Lele49g0723 49 4406891 4408959 Lele51g0744 51 4509171 4511237 hybridization
Lele49g0723 49 4406891 4408959 Lele52g0751 52 4749737 4751843 hybridization