Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0717 ATGACTGCGCCTTCCATCAGATTCTCCGGCCACACTAAACTAGCCACGCCGGAGGAGCAACACCATCTGTGCCGAGGAATGGAGTATCCTAGAGTTGTTAGAATATGCGTGACAGACGGCGATGCCACGGATTCCTCCAGCGACGAAGGAGAGCCTGTCACGCGCCACCGCGGTAGGAGGTTCGTCCACGAGGTTACCATCACCCAAATCGATGTCGTTGCTAAGCCTGAGAGCAAGCGTCGGAAGGGCAATAGGAGAAGAGTAATGGGAAGTCGGCTGGCTATGAATTCGTCGGCGGGGAAGAAGTTCAGAGGAGTGAGACAAAGGCCGTGGGGGAAATGGGCGGCGGAGATCAGAGATCCTCTGCGACGTGTACGGTTGTGGTTGGGAACATACGAAACTGCAGAGGAAGCTGCGATGGTGTACGATAAGGCAGCCATTAAGCTGAGAGGAGCAGAGGCACTGACCAATCTCATAAAGCCACCGGGGAAGGAGGAGAGCGAGGACAAGAAAACGTTGAGTTCCCCGAAATCTGTTCTTGAGTCTCAGGGTGGTAGTTTGTCAGAGGAGGTTGAATCTGTAACAACAACCAAAGATGACACGATCAGTGAATGTCGGGACGAATCACCGACCTCATCATCGTCGACAGGGTTATCGGAGAATTTCTCAGGGTTTCCGGCGGACATATTTGACTTCCAGGCATCGTTGCCGGATATATTTGACGAGACAAATATCACCGAAAGCATCTACTCCAATGCGTGGATGAGTCCGACGGAAAACTTCAACTTGGATTTGGAGTTAGAGTCGGGTTTCGGATATTCGAGTTGGCATAGAGACGACTATTTCCAAGATATCGGCGATTTGTTTGTTACAGATCCGCTTGTTGCTCTGTGA 894 0.5145 MTAPSIRFSGHTKLATPEEQHHLCRGMEYPRVVRICVTDGDATDSSSDEGEPVTRHRGRRFVHEVTITQIDVVAKPESKRRKGNRRRVMGSRLAMNSSAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYETAEEAAMVYDKAAIKLRGAEALTNLIKPPGKEESEDKKTLSSPKSVLESQGGSLSEEVESVTTTKDDTISECRDESPTSSSSTGLSENFSGFPADIFDFQASLPDIFDETNITESIYSNAWMSPTENFNLDLELESGFGYSSWHRDDYFQDIGDLFVTDPLVAL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0717 297 MobiDBLite consensus disorder prediction 176 192 - -
Lele49g0717 297 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Lele49g0717 297 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Lele49g0717 297 SMART rav1_2 102 167 IPR001471 GO:0003700|GO:0006355
Lele49g0717 297 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 184 - -
Lele49g0717 297 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700|GO:0006355
Lele49g0717 297 CDD AP2 101 157 IPR001471 GO:0003700|GO:0006355
Lele49g0717 297 FunFam Ethylene-responsive transcription factor 2 101 160 - -
Lele49g0717 297 Pfam AP2 domain 102 151 IPR001471 GO:0003700|GO:0006355
Lele49g0717 297 SUPERFAMILY DNA-binding domain 102 158 IPR016177 GO:0003677
Lele49g0717 297 Gene3D AP2/ERF domain 101 159 IPR036955 GO:0003700|GO:0006355
Lele49g0717 297 MobiDBLite consensus disorder prediction 159 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0717 Lele-ChrLele49 4361353 4362246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0717 1 297 AP2-EREBP Transcription Factor Family AT4G23750 39.831 4.27e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele49g0717 AP2 4.2e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0717 49 4361353 4362246 Lele51g0737 51 4463122 4464018 hybridization
Lele49g0717 49 4361353 4362246 Lele52g0742 52 4710348 4711247 hybridization