Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0690 ATGGATGATAACTTGCTCGACGATATTATACGGAGGCTTATCTCGGCTAAGAACGGCAGAACGACGAAACAGGTTCAGCTTACGGAGTCCGAAATCCGCCAGCTCTGTGTCTCTTCCAAGGAGGTCTTTCTCAGCCAGCCTAATCTTCTCGAACTTGAAGCACCGATTAAGATTTGTGGAGATGTTCACGGTCAGTTTTCAGATCTTTTAAGGTTGTTTGAGTATGGAGGATACCCACCAGAAGCCAATTATTTGTTTCTCGGTGATTATGTTGACCGTGGTAAGCAGAGCATAGAGACAATCTGTTTACTCCTTGCATACAAGATCAAATACAAGGAGAACTTCTTTCTTCTCAGGGGAAACCACGAATGTGCTTCCATCAATCGTATATATGGGTTTTATGATGAGTGCAAGAGGAGGTTTAATGTTCGCATATGGAAGACTTTTACAGACTGCTTTAATTGTTTGCCTGTTGCTGCTCTAATAGATGAGAAGATCCTTTGCATGCATGGTGGACTATCTCCTGATCTTAAAAATTTGGATCAGATAAGAAATATTGCTCGCCCTATTGATGTGCCTGATCAGGGCCTTCTCTGTGACCTGCTCTGGGCTGATCCTGATAAAGATCTTGATGGCTGGGGAGAAAATGACCGGGGTGTCTCATTTACATTTGGAGCTGACAAGGTTGTTGAATTTCTTGAAAAACATGATCTTGATCTGATTTGCAGAGCTCACCAGGTTGTTGAAGATGGATATGAGTTTTTTGCAAAGCGTCAGCTAGTGACTGTATTCTCTGCCCCAAATTACTGTGGCGAGTTTGATAATGCTGGTGCTATGATGAGTGTGGATGACACCTTGACATGCTCTTTCCAGATCCTCAAAGCCTCTGACAAGAAAGGGAAAGGGGGATTTGGAAACAGCACGCTAAGACCAGGAACTCCACCTCATAAGGGTGGGAAGGGTTGA 966 0.4379 MDDNLLDDIIRRLISAKNGRTTKQVQLTESEIRQLCVSSKEVFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRIWKTFTDCFNCLPVAALIDEKILCMHGGLSPDLKNLDQIRNIARPIDVPDQGLLCDLLWADPDKDLDGWGENDRGVSFTFGADKVVEFLEKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASDKKGKGGFGNSTLRPGTPPHKGGKG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0690 321 Pfam Calcineurin-like phosphoesterase 55 247 IPR004843 GO:0016787
Lele49g0690 321 Pfam Serine-threonine protein phosphatase N-terminal domain 6 53 IPR031675 -
Lele49g0690 321 Gene3D - 1 305 IPR029052 -
Lele49g0690 321 SMART pp2a_7 27 297 IPR006186 GO:0016787
Lele49g0690 321 CDD MPP_PP1_PPKL 6 294 - -
Lele49g0690 321 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Lele49g0690 321 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Lele49g0690 321 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Lele49g0690 321 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Lele49g0690 321 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Lele49g0690 321 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Lele49g0690 321 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Lele49g0690 321 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Lele49g0690 321 FunFam Serine/threonine-protein phosphatase 1 303 - -
Lele49g0690 321 MobiDBLite consensus disorder prediction 301 321 - -
Lele49g0690 321 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 298 - -
Lele49g0690 321 SUPERFAMILY Metallo-dependent phosphatases 21 297 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0690 Lele-ChrLele49 4186359 4191210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0690 56 240 Calmodulin-binding Proteins AT5G63870 30.455 5.13e-27 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0690 49 4186359 4191210 Lele49g0690 49 4186359 4191210 ECH
Lele49g0690 49 4186359 4191210 Lele51g0709 51 4281143 4285950 hybridization