Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0675 ATGGGTCACCACTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAACTCATCAGATACATTACCACTCATGGTTATGGCTGTTGGAGTGAAGTCCCTGAGAAAGCTGGGCTGCAACGGTGCGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACTCCTGAAGAGGAGAAGTTAATTATAAGCCTTCATGGTGTCGTCGGCAACAGTGTCTCAGCTACAGTTAAGGAGAAGTGGGCTCACATTGCAAGCCACTTGCCTGGAAGAACTGACAACGAGATAAAGAACTATTGGAATTCGTGGATCAAAAAGAAAATAAGAAAGACTTCATCAGTGTCTTCAACCACAAGTTCACAAAGCAACAGCGTTGATCATCATCATCATAATCATCATCCTCAATATAAATTAGACTTGGCAAACCAAGATAATCGTCTAAGAACAAAACCACCACCAGTAGTTAATCATCAAGACACAACTATATTTTCTTCCACATGCCCCTTATTTATGTTTGACACTAGTTCTTTAGATGGTTCTGCAACAACGACCACATTGCTCGACAACAACAACAATGCAACAAGACCAGAAATGTTAATCCATCATCATCAGCATGATCATGCTACTACTATGGGTTTAAGCAGCACAGAAACATGGAATCTGATGAGTCACCATCATCAAATTCAAGCCTTTCCTGATCATCTTCCTCCTTCGTCGGCTTCTTTCACGACGGCGGTGGCTTCAGGCATGGTGTCTTCTAATTATCTGCCACCATTGATAGAGAATGTGGTCAGCATGGTGCCGAATATTCATGAAGTGCAATCTTGCAGTATAGATGAAGAGGGTGAAATGGCACTAGAGTGCTTGCAGAGGCAACAAGAGTTGAACGAGTGGGTGGTGGATACACAGCAACAATGTCCCAACTTTATTTTCTGGGAAAATGTGGAAGGACAACTTGGTGGGGAAGAAATAGCACCAAATTCGTCAAATTTGCCAAATACACTTTCTTCTTTTCCTTCGTCCTTATGA 1077 0.4243 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNSVSATVKEKWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSSVSSTTSSQSNSVDHHHHNHHPQYKLDLANQDNRLRTKPPPVVNHQDTTIFSSTCPLFMFDTSSLDGSATTTTLLDNNNNATRPEMLIHHHQHDHATTMGLSSTETWNLMSHHHQIQAFPDHLPPSSASFTTAVASGMVSSNYLPPLIENVVSMVPNIHEVQSCSIDEEGEMALECLQRQQELNEWVVDTQQQCPNFIFWENVEGQLGGEEIAPNSSNLPNTLSSFPSSL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0675 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 124 IPR017930 -
Lele49g0675 358 SMART sant 66 122 IPR001005 -
Lele49g0675 358 SMART sant 13 63 IPR001005 -
Lele49g0675 358 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele49g0675 358 Pfam Myb-like DNA-binding domain 67 119 IPR001005 -
Lele49g0675 358 CDD SANT 69 120 IPR001005 -
Lele49g0675 358 Gene3D - 6 66 - -
Lele49g0675 358 PANTHER MYB DOMAIN PROTEIN 55 1 258 - -
Lele49g0675 358 ProSiteProfiles Myb-like domain profile. 62 120 IPR001005 -
Lele49g0675 358 MobiDBLite consensus disorder prediction 339 358 - -
Lele49g0675 358 MobiDBLite consensus disorder prediction 127 150 - -
Lele49g0675 358 CDD SANT 17 61 IPR001005 -
Lele49g0675 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele49g0675 358 FunFam MYB transcription factor 6 66 - -
Lele49g0675 358 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele49g0675 358 SUPERFAMILY Homeodomain-like 11 116 IPR009057 -
Lele49g0675 358 Gene3D - 68 153 - -
Lele49g0675 358 FunFam Transcription factor MYB26 68 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0675 Lele-ChrLele49 4101447 4103290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0675 1 343 MYB Transcription Factor Family AT1G63910 47.861 1.38e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele49g0675 Myb_DNA-binding 1.6e-12 CL0123