Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0674 ATGGGGCCGGGGTTACTGCCAGAGGGAGTTTGCTATGCAAAGAAGGACTTCAATATGCCCAAGCATCCCGAGATTGATGTGCCGAATCTACAAGTTATTAAGCTGATGCAGAGCTTTAAGTCCAAGGAGTACGTGCGTGAGACATTTGCGTGGATGCACTACTACTGGTACCTCACTAACGATGGCATTGAGTTCCTTAGAACTTACCTCAATCTTCCTTCGGAAATCGTGCCTGCTACTCTGAAGAAACAAGCTAAGCCAGCTGGTAGACCATTTGGTGGCCCACCTGGTGACCGTCCAAGGGGTCCACCTCGCTTTGAGGGAGAACGTCGGTTTGGTGACCGTGATGGATACCGTGGGGGTCCCCGAGCCGGTGGTGACTCTGGAGACAAGGGCGGAGCTCCTGCTGACTACAGACCTTCATTCGGGGGTTCTGGAGGAAGGCCTGGATTTGGTCGTGGTGCTGGTGGGTTTCTCACTGGACGAAGGGCAAAGCGGGTGAGAGGAACCGTCTTGTGGGTGCCGTCTTCTGCAGCCTTCGCCTCCACTCCCTCCCGCCTCGCAACCATGATTATTCCTGAGAAGAACCGTCGTGAGATCTGCAAATACCTCTTCAAAGAGGGAGTTTGCTATGCAAAGAAGGACTTCAATATGCCCAAGCATCCCGAGATTGATGTGCCGAATCTACAAGTTATTAAGCTGATGCAGAGCTTTAAGTCCAAGGAGTACGTGCGTGAGACATTTGCGTGGATGCACTACTACTGGTACCTCACTAACGATGGCATTGAGTTCCTTAGAACTTACCTCAATCTTCCTTCGGAAATCGTGCCTGCTACTCTGAAGAAACAAGCTAAGCCAGCTGGTAGACCATTTGGTGGCCCACCTGGTGACCGTCCAAGGGGTCCACCTCGCTTTGAGGGAGAACGTAGGTTTGGCGACCGCGATGGATACCGCGGAGGTCCCCGAGGACCTGGTGGTGACTTTGGAGACAAGGGTGGAGCTCCTGCTGACTACAGACCTTCATTCGGGGGTTCTGGAGGAAGGCCTGGATTTGGTCGTGGTGCTGGTGGTTTTGGAGCACCAACAAGCTCAAATCTATCTTAA 1104 0.5281 MGPGLLPEGVCYAKKDFNMPKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRAGGDSGDKGGAPADYRPSFGGSGGRPGFGRGAGGFLTGRRAKRVRGTVLWVPSSAAFASTPSRLATMIIPEKNRREICKYLFKEGVCYAKKDFNMPKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGSGGRPGFGRGAGGFGAPTSSNLS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0674 367 MobiDBLite consensus disorder prediction 301 317 - -
Lele49g0674 367 Pfam Plectin/S10 domain 5 84 IPR005326 -
Lele49g0674 367 Pfam Plectin/S10 domain 192 283 IPR005326 -
Lele49g0674 367 FunFam 40S ribosomal protein S10 190 293 - -
Lele49g0674 367 FunFam 40S ribosomal protein S10 3 94 - -
Lele49g0674 367 MobiDBLite consensus disorder prediction 102 121 - -
Lele49g0674 367 MobiDBLite consensus disorder prediction 81 155 - -
Lele49g0674 367 PANTHER 40S RIBOSOMAL PROTEIN S10 190 361 IPR037447 -
Lele49g0674 367 MobiDBLite consensus disorder prediction 280 367 - -
Lele49g0674 367 Gene3D - 4 94 IPR036388 -
Lele49g0674 367 Gene3D - 190 293 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0674 Lele-ChrLele49 4093788 4101406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0674 190 366 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 76.404 1.52e-74 227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0674 49 4093788 4101406 Lele51g0692 51 4185684 4187313 hybridization
Lele49g0674 49 4093788 4101406 Lele52g0699 52 4405123 4408232 hybridization