Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0659 ATGGGCGGTTGCTGTTGCTGTTCTTCCAAAGAAACTGAATTGAGCGATTCCCCAGAGTACTTCTATCACCCTAGAGCAGCGGAGGAGCGTGTTCCTCTATCATCTAATCATGGTTCTGCATCTGCTTTCTCTAGAGGGCTCCTAGTGGATACTAATCTTGAAACTTCAAGTCCTGACACTTATAGACCACCACCTGCTCCTGTACCTTACAGCAGTGTTACTTTGGTTGTCACTGAAACTCCACCTGGGGTTCAAGAAATTAATGATAATAAGAATAATGCATCCCTTCAATCTACAAATCCTAATTCAGTTCAAGAATTAGTTACTAGTGATGGTCATGGAAATTTGACCAAGTTGGAAGAGCAGAAGGAACTAGAAGGTAAAATTCAGGGTGATTTAGAACTGGACTCAGCTAAGGATTCAGAAATTGAACTTCAAAAGCTAGAAGAACCTGTCATATTAGCTGAAGAGGAGGATGCATGCCCTATCTGTTTAGAAGAGTATGATGCCGAGAATCCAAAACTCAACACAAAATGTGATCATCATTTTCACCTTGCGTGCATTCTGGAATGGATGGAAAGAAGTGAAAACTGTCCTGTGTGTGATAAGGATATGGTTTTCGAGTCCTCCAATTGA 636 0.4135 MGGCCCCSSKETELSDSPEYFYHPRAAEERVPLSSNHGSASAFSRGLLVDTNLETSSPDTYRPPPAPVPYSSVTLVVTETPPGVQEINDNKNNASLQSTNPNSVQELVTSDGHGNLTKLEEQKELEGKIQGDLELDSAKDSEIELQKLEEPVILAEEEDACPICLEEYDAENPKLNTKCDHHFHLACILEWMERSENCPVCDKDMVFESSN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0659 211 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Lele49g0659 211 FunFam Putative E3 ubiquitin-protein ligase RHB1A 138 206 - -
Lele49g0659 211 SUPERFAMILY RING/U-box 154 207 - -
Lele49g0659 211 Pfam Ring finger domain 160 201 IPR001841 -
Lele49g0659 211 SMART ring_2 161 201 IPR001841 -
Lele49g0659 211 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 209 - -
Lele49g0659 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 209 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0659 Lele-ChrLele49 4003338 4005332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0659 1 210 C3H Transcription Factor Family AT5G41350 52.804 4.34e-67 203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0659 49 4003338 4005332 Lele51g0676 51 4102540 4104567 hybridization
Lele49g0659 49 4003338 4005332 Lele52g0680 52 4306502 4309001 hybridization