Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0631 ATGTTACTCAACGGAGTCCAATCTAAGGGAAGAAAGCATAGAGCTGAAGTCCATAACAATTACAAGGAGAATCACGAAACTAGGTCAACAGATTGGCACGCAGTTTTAATTGACAGTGCTGATCCTCGCGGTTCTGGATATTATCAGGAGGAGACCATTCGCGAGGCCATTGAAGTTGCTGGGTTTGAAGCTACATTGCTAATAGATGAGATGAATGAGAGATCTGTTCAAGTATGTCCCATAACCGTAACTGGAACGACTTGCACTTATTGCTCCTCCACTGTTGAAACAGCACTGCAAGCAATTCCAGGTGTGCTGAAACCTCAAGTGGATTTGGTAACTAATGAAGCGGAAGTACACTACAATCTAAACATTGTCAACCACAATCAAATTCTGGAAGCCATAGAAGACACTGGATTTGAAGCCACACTTACCAGTTCAGGTGAAGACATAAGCAAAGTAGAGCTCCAAGTTGAGGGTGTACAAACTGAAGATTTCATGAGAAACATTGTTCGACTAGTTGAATCAGGACAGTTGGCCAAGGCTCCTGTGCAGAAGTCTGCTGATCGCATTTCAAAATTCTTTGTGCCTTTGTTTGGCATCTCTATCATGGTCATAGCTTGCCCTTGTGCTCTAGGTCTAGCCACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAAGGGGTACTAATCAAAGGAGGGCAAGCATTAGAAAGTACACATGAGGTGAAATGCATTGTCTTCGACAAGACTGGTATTCTCACCATAGGGAAGCCTGTGGTTCTAAACACTAAACTATTGATTAATATGGTACTCCAAGAATTTTATGAACTTGTGGCAGGAGCTAAGGCCATTCTTCGAAATAAGGAAATAATTGTGGGTAACAAGAGATTGTTGGCTGACCATAATATTGCAGTTCCTGTGGAGGCGGAAGATATACTGGCTGAGGCTGAGGGGATGGCTCAAACTGGAATTTTGGTATCGATTAATAGGGAAGTGGCTGGAGTTGTAGCAGTATCTGATCCATTGAAACCGGGTGCTCAAGAAGTGATCTCAATTCTCAAGTCCATAAACATGAAAAGCATCCTAGTAACCGGTGACAACCGGGGAACTGCTAATTCTATAGCAAGGGAAGTCAGGATTGAAGAAGTATTTGCTGAGACTAAACCGGAGGAGAAAGCAGAGAAAGTGAAGGAGTTGCAGGTACTTGAAAACCACGATTTTGAATTATGTTCCAGAAAAAAAATGTGTTCTTTCATTAGAGTAGACTTCCTAGTGAACGAAGCAAATTGA 1302 0.4263 MLLNGVQSKGRKHRAEVHNNYKENHETRSTDWHAVLIDSADPRGSGYYQEETIREAIEVAGFEATLLIDEMNERSVQVCPITVTGTTCTYCSSTVETALQAIPGVLKPQVDLVTNEAEVHYNLNIVNHNQILEAIEDTGFEATLTSSGEDISKVELQVEGVQTEDFMRNIVRLVESGQLAKAPVQKSADRISKFFVPLFGISIMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHEVKCIVFDKTGILTIGKPVVLNTKLLINMVLQEFYELVAGAKAILRNKEIIVGNKRLLADHNIAVPVEAEDILAEAEGMAQTGILVSINREVAGVVAVSDPLKPGAQEVISILKSINMKSILVTGDNRGTANSIAREVRIEEVFAETKPEEKAEKVKELQVLENHDFELCSRKKMCSFIRVDFLVNEAN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0631 433 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 194 404 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele49g0631 433 Gene3D - 77 148 - -
Lele49g0631 433 SUPERFAMILY HMA, heavy metal-associated domain 75 148 IPR036163 GO:0046872
Lele49g0631 433 Pfam haloacid dehalogenase-like hydrolase 246 405 - -
Lele49g0631 433 Gene3D - 287 344 IPR023299 GO:0000166
Lele49g0631 433 PRINTS Copper-transporting ATPase 1 signature 78 103 - -
Lele49g0631 433 PRINTS Copper-transporting ATPase 1 signature 133 153 - -
Lele49g0631 433 PRINTS Copper-transporting ATPase 1 signature 104 127 - -
Lele49g0631 433 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 162 198 - -
Lele49g0631 433 Gene3D - 217 420 IPR023214 -
Lele49g0631 433 SUPERFAMILY HAD-like 238 406 IPR036412 -
Lele49g0631 433 CDD HMA 81 143 IPR006121 GO:0046872
Lele49g0631 433 Pfam Heavy-metal-associated domain 82 141 IPR006121 GO:0046872
Lele49g0631 433 ProSiteProfiles Heavy-metal-associated domain profile. 78 144 IPR006121 GO:0046872
Lele49g0631 433 FunFam ATPase copper transporting beta 73 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0631 Lele-ChrLele49 3820857 3825188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0631 137 404 Primary Pumps ATPases AT1G63440 54.885 2.62e-107 338