Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0624 ATGTACTCGTCAATCGGAGCAGAACGATCCAGGGCATTGCCGAAAATTCTCTGCAACTTCATCTTGGTCCGAAACATGGGTGGGGGTCCTCGGACTTTCCCGGGCGGCGTCAACAAGTGGAAATGGAAGCGCATGCACGAGAAGCGAGCTAGAGATAAAGAGAGAAGGCTTCTCGAACAAGAAAAGCAGCTCTACCAGGCTCGAATTCGCTCCCATATTCGAGCCAAAATCGCGGGAAAATCTGGCACCTCAAGTGCCACTCACAATCCTATAGCCCCGGAGGACCATATCGAGGCCTTAGCCAATCGATTTATGAAGGAAGGGGCTGAAGATCTCTGGAACGGAAACGACGGTCCGTTGAAACCTCCGCCTCCGCGTCTCAGAGAATTTGCGGGATCAAGCAGACGGCGAGGATCAATCGCGTCGCCGGTTGATCTGAGGAAACTGGTTCCGGAAGGCCGTCAGATGTTTTCTGATCGCCAAAATGACAATCTGATGACTTCGAGTAGTAATTTTATTCACACCAGGGATTACTCAACGCAATGTCGGAGGAGGTTTCAGAGGAACGAGAGCTCGTCAGAGGAGGAAGATTCTGATTTTCGTTTGGAGAGAAATCCTGCAAGACCCATAGTCAGAAATTTATTTAGTAGTCAGAAAACCCTGAGTAATGCAAATGCGGGTGATTATATAAACAAGAAGAAAAATATCCCGAAAAGGCAGCGAAAGTTATGGAGAGATGACAGTTCTTCTAGCGAGAGTGAATCGGACATGGATTCAGCTGGTTTAGGGATCGTCAGGAGCGTAAATAAGATAGGTAGTAGTGCTTCTCTGGGGAAGCATGACGTGAAGACGAAGAGGAGGGTGCTCCCGAAGCCTTATGACGAGGAGAGTGACCTTTCGGAACAGGTTGAATTGATCAGGTATGAATTAAATAAGAGGAAGATGACCGAGAATGAGCAGCAGAAAAGAGAGGAAGATACTTTACTTAGTCAGAAAAGATTTGATGAGTGTGCTATATCGCCACTGACAATCAAGGCACTTTCTTCAGCTGGTTATTTTCGCATGACACGAGTTCAAGAGGCTAGCCTTTCTGTTTCCCTTGAGGGCGAGGATGCTTTGGTCAAAGCTAAAACTGGCACTGGGAAAAGTGCAGCATTTTTGCTTCCTGCCATTGAAACAGTTCTTAAGGCAATGAGTGTAAATGCCCCTCAACGTGTGCCTCCAATACTTGTTCTGATCCTCTGCCCTACCAGAGAACTTGCTATTCAAATCACTGCAGAATTAAAAGTTCTACTCAAGTACCATGACGAAATTGGAGTTCAGACTCTAATCGGAGGTATTCGATTTAAAGATGACCAAAAACGTCTTGAATCAGATCCATCGCAGATCATTGTTGCTACTCCAGGTAGGTTGCTGGATCATATTGAGTATAAGTCTGGAATATCTTTGCGGTTGATGGGTTTGCGGATGCTTATACTTGATGAAGCTGATCATTTGTTGGACCTGGGATTTCGAAAGAGTGTAGAAAAGCTTGTTGATTGTTTGCCCCGTCAAAGGCAATCCTTGTTATTTTCTGCAACCATTCCAAAGGAGGTCCGACGTATATCTCAACTTGTTTTGAAAAGGGATCACACATATATTGACACAGTGGGGATAAATTGTGTGGAAACTCCTGTTAAAGTAAAGCAGTCTTATCTTGTCGCTCCTCATGAATCTCATTTTCAAATATTGCACCATATTTTGAAGGAGCATATCTTGCAAGCACCTGATTATAAGGTTATTGTTTTCTGTATAACTGGTATGGTGACTTCACTCTTGTATCAACTTCTTCGGGAAATGAAAATGAATGTTAGGGAGATACATTCCCGAAAACCTCAACTTTATCGAACTCGCATTTCGGATGAGTTCAGGGAATCCAAACAACTGATTCTTATCTCGTCTGATGTTACATCTCGCGGAATGAATTATCCTGATGTTAGTTTAGTCATCCAGGTGGGTATTCCTACTGACCGGGAACAATATATCCATCGTGTTGGGAGAACGGGACGAGAAGGCAAAGAAGGGGAATGCATACTGTTGATTGCTCCATGGGAAGAGTACTTTTTAGATGAAATCAAAGATCTCCCTCTCACGAGGTTCCCTTTACCAGATATAGATCCCGAGGCAAAGCTTCAGGTAGGAAATTCAATGGCAAAGATTGATAATGACGTCAAAGAATCAGCTTATCACACGTGGCTTGGTTACTATAATTCGATAAGGGAAATCGGGAGAGATAAAACGACTGTAGCGGAGCTAGCAAACCAATTTTCGGAATCAATCGGTTTACATAGGCCTCCTGCTCTCTTCAGGAAGACTGCATTAAAAATGGGATTGAAAGACATTCCTGGCATCAGAATACGCAGATAG 2406 0.4414 MYSSIGAERSRALPKILCNFILVRNMGGGPRTFPGGVNKWKWKRMHEKRARDKERRLLEQEKQLYQARIRSHIRAKIAGKSGTSSATHNPIAPEDHIEALANRFMKEGAEDLWNGNDGPLKPPPPRLREFAGSSRRRGSIASPVDLRKLVPEGRQMFSDRQNDNLMTSSSNFIHTRDYSTQCRRRFQRNESSSEEEDSDFRLERNPARPIVRNLFSSQKTLSNANAGDYINKKKNIPKRQRKLWRDDSSSSESESDMDSAGLGIVRSVNKIGSSASLGKHDVKTKRRVLPKPYDEESDLSEQVELIRYELNKRKMTENEQQKREEDTLLSQKRFDECAISPLTIKALSSAGYFRMTRVQEASLSVSLEGEDALVKAKTGTGKSAAFLLPAIETVLKAMSVNAPQRVPPILVLILCPTRELAIQITAELKVLLKYHDEIGVQTLIGGIRFKDDQKRLESDPSQIIVATPGRLLDHIEYKSGISLRLMGLRMLILDEADHLLDLGFRKSVEKLVDCLPRQRQSLLFSATIPKEVRRISQLVLKRDHTYIDTVGINCVETPVKVKQSYLVAPHESHFQILHHILKEHILQAPDYKVIVFCITGMVTSLLYQLLREMKMNVREIHSRKPQLYRTRISDEFRESKQLILISSDVTSRGMNYPDVSLVIQVGIPTDREQYIHRVGRTGREGKEGECILLIAPWEEYFLDEIKDLPLTRFPLPDIDPEAKLQVGNSMAKIDNDVKESAYHTWLGYYNSIREIGRDKTTVAELANQFSESIGLHRPPALFRKTALKMGLKDIPGIRIRR 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0624 801 MobiDBLite consensus disorder prediction 226 260 - -
Lele49g0624 801 PANTHER RNA HELICASE 294 730 - -
Lele49g0624 801 Coils Coil 305 325 - -
Lele49g0624 801 CDD SF2_C_DEAD 561 694 - -
Lele49g0624 801 Gene3D - 309 548 IPR027417 -
Lele49g0624 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 702 IPR027417 -
Lele49g0624 801 Coils Coil 43 63 - -
Lele49g0624 801 SMART helicmild6 604 685 IPR001650 -
Lele49g0624 801 Gene3D - 556 779 IPR027417 -
Lele49g0624 801 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 332 360 IPR014014 GO:0003724
Lele49g0624 801 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 546 IPR014001 -
Lele49g0624 801 MobiDBLite consensus disorder prediction 183 204 - -
Lele49g0624 801 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 580 730 IPR001650 -
Lele49g0624 801 Pfam DEAD/DEAH box helicase 356 534 IPR011545 GO:0003676|GO:0005524
Lele49g0624 801 SMART ultradead3 351 562 IPR014001 -
Lele49g0624 801 Pfam Helicase conserved C-terminal domain 579 684 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0624 Lele-ChrLele49 3778780 3782702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0624 334 710 Eukaryotic Initiation Factors Gene Family AT3G19760 29.114 2.30e-43 160