Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0619 ATGGCGCCATTGCCGGTGGAGCAGACCGTTGAATCAGCAACGACTGATTCGCAGAGATCTATTCTGACGCCATTTCTGACGAAAACCTACCAGCTTGTGGAGGACCCCTCTTTGGATGAGCTGATTTCCTGGAATGAAGATGGAACGAGTTTCATAGTTTGGCGACCCGCTGAATTCGCTCGAGATTTGCTTCCAAAGTATTTCAAACACAATAACTTTTCCAGTTTCGTCCGCCAACTAAACACCTATGGATTTCGGAAGGTTGTCCCCGATCGTTGGGAATTCGCTAATGACGGTTTCCGGCGAGGCGAGAGAAGCCTGCTTCGAGACATTCAGCGGCGGAAAATATCGACAACGTCTACGGCTGGCGTAGCTGCGGCCAATACAGTGACGGTGGCTGCAGTACCTGCCGCCGCTATAGGGGTGTCTCCGACCAACTCCGGTGAGGAACAGGTAATCTCTTCAAACACATCTCCGATTGCCGCAAATAATACAGCGCAGCGCACTACAAGTTGCACCACTGCACCCGAGCTCTTAGAAGAGAATAACAAGCTTAGGAAAGAGAACATGCAATTGAGTAATGAATTGAGTCAATTGAAGGGGCTCTGTAATAACATACTGACATTGATGACGAATTATGCTTCAAGCCAATTAGAATCCAGTAGTGCTGGTGAAGGAAAACCATTGGAGCTTTTACCTACGACGCAGCTTTCGGCCGAGGAAGCCATCTTAGGAGGCGGCGGCGCTTCGCAAGAGACGAAAGTTGCAGAAGCGGAGGTGCCAAAATTGTTCGGGGTTTCAATTGGGGCAAAACGACGTCGGAGTTCAGAGGGTGAGGAGGCAGAAAAAGAAGAACAAAATCAAAGGCAGTCGTCCCAAGAACCCGACGGTGGCTCCGATGTGAAAACAGAGCTGCTAGATGGTAGTAACTCGGATGATCCGGAGACACCCTGGTTGGAGCTTGGGAAACAATAG 975 0.4985 MAPLPVEQTVESATTDSQRSILTPFLTKTYQLVEDPSLDELISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDGFRRGERSLLRDIQRRKISTTSTAGVAAANTVTVAAVPAAAIGVSPTNSGEEQVISSNTSPIAANNTAQRTTSCTTAPELLEENNKLRKENMQLSNELSQLKGLCNNILTLMTNYASSQLESSSAGEGKPLELLPTTQLSAEEAILGGGGASQETKVAEAEVPKLFGVSIGAKRRRSSEGEEAEKEEQNQRQSSQEPDGGSDVKTELLDGSNSDDPETPWLELGKQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0619 324 MobiDBLite consensus disorder prediction 272 290 - -
Lele49g0619 324 MobiDBLite consensus disorder prediction 248 324 - -
Lele49g0619 324 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele49g0619 324 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele49g0619 324 Coils Coil 175 202 - -
Lele49g0619 324 Gene3D - 17 115 IPR036388 -
Lele49g0619 324 FunFam Heat stress transcription factor B-4 17 115 - -
Lele49g0619 324 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele49g0619 324 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele49g0619 324 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele49g0619 324 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele49g0619 324 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 292 IPR027725 -
Lele49g0619 324 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0619 Lele-ChrLele49 3753909 3754987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0619 16 323 HSF AT4G11660 59.327 2.51e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele49g0619 HSF_DNA-bind 7.2e-33 CL0123