Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0549 ATGTGTTACATACTTCATCTGTTAGCGTTTGAGAAAGTAACTGACCCTGAGGTCGTGAAGCTGATTTTTCCAATTCTCTTCCAAGTAAATGCAGGTTCAAATATCTCTGCGAGTATGAATACGTTTTCACATGTTCCTCCAGGCTTTCGGTTCCACCCTACAGATGAAGAACTGGTTGATTATTACCTAAGAAAAAAGGTAGCCTCCAAAAGGATTGACCTAGATGTTATTAAAGATGTGGATCTCTATAAAATAGAGCCATGGGATCTTCAAGGAGCGGAAGAACAAAATGACTGGTATTTCTTTAGCCACAAAGATAAGAAGTACCCAACTGGGACTCGCACGAATAGAGCCACAAAAGCAGGATTCTGGAAAGCAACAGGAAGAGACAAGGCAATCTACCGTAGACATTGCCTCATTGGGATGAGAAAGACTCTTGTTTATTACAAGGGACGAGCGCCAAACGGACAGAAGTCTGACTGGATCATGCATGAATACCGACTTGAAACCAATGAAAATGGAACTCCTCAGGAAGAAGGTTGGGTTGTATGTCGAGTGTTCAAGAAGAAAATGACAAGCGCTAGGAGAGTGGGGGATTTTGAGTCATCATGCTGGTTCGAGGACCAAGTCTCCTTGATGCAGGAGCTTGAATCTGCAAGACCAATTTCTCATCAACCTTATGCATCTAATTACCACCAGCAGCAGTACTACCTACCTTGCAAGCAGGAACTTCGTCAATTGCAATATAACGTAACCCATCCCCATGAAGTTTTCCTTCAGCTTCCCCAACTTGAAAGCCCCAGAGTTCCTTACTCAGCCGCCAGTTTGAGCTGCAACAATTCAACGGTCCCTTACGCATATGACAGCAACAATAATAATGGAAGTAGCTTGCAGTCACCCAATTCACTCACTCAGGAGGAGAACATACCTTGTGGGAACAATAATGATCCAGTGACTGACTGGCGAGTTCTTGATAAATTTGTGGCTTCTCAACTCAGCAGTCAGCAGCAAGATGCTTCCAAGGAAGCCACCTATTCCAATGCAGAAGTGCTCCATGTGGATGAACCTGTCACTAAAAGGCCAGAAATTGCGCAGCAGGAATATGCCTCCGCATCCACCTCGAGTTGCCAGATTGACCTGTGGAACTGA 1149 0.4447 MCYILHLLAFEKVTDPEVVKLIFPILFQVNAGSNISASMNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQGAEEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYRRHCLIGMRKTLVYYKGRAPNGQKSDWIMHEYRLETNENGTPQEEGWVVCRVFKKKMTSARRVGDFESSCWFEDQVSLMQELESARPISHQPYASNYHQQQYYLPCKQELRQLQYNVTHPHEVFLQLPQLESPRVPYSAASLSCNNSTVPYAYDSNNNNGSSLQSPNSLTQEENIPCGNNNDPVTDWRVLDKFVASQLSSQQQDASKEATYSNAEVLHVDEPVTKRPEIAQQEYASASTSSCQIDLWN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0549 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 44 295 - -
Lele49g0549 382 MobiDBLite consensus disorder prediction 287 315 - -
Lele49g0549 382 Pfam No apical meristem (NAM) protein 46 168 IPR003441 GO:0003677|GO:0006355
Lele49g0549 382 Gene3D NAC domain 54 193 IPR036093 GO:0003677|GO:0006355
Lele49g0549 382 FunFam Nac domain-containing protein 86 54 192 - -
Lele49g0549 382 ProSiteProfiles NAC domain profile. 45 189 IPR003441 GO:0003677|GO:0006355
Lele49g0549 382 SUPERFAMILY NAC domain 36 189 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0549 Lele-ChrLele49 3323767 3326447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0549 39 381 NAC Transcription Factor Family AT1G12260 56.499 2.91e-131 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele49g0549 NAM 3.1e-37 No_clan