Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0548 ATGTCATCATCCTCTTCTACTGCCTTATCGCTGGACCACCTCCCTCCTTCCGAGCAGCTTTGTTATGTCCACTGCAACATTTGTGACACTGTCCTCGCTGTGAGTGTTCCTTGCACCAGCTTGTTCAAGACGGTGACGGTGCGATGCGGCCATTGCTCCAACCTCCTGCCGGTTAACGTGAACGTGCGTGGATTGCTTCTTCCTTCAGCAAACCAATTTCACTTGAGTCACTCTTTCTACTCTCCATCCCACAATCTTCTGGAGGAGATACCAAACCCATCCCCAAATTTCTCAATCAATCAGACCAACTCTTCCAATGACTTCTCTATGCCTTCGAGGACAACAGTTGATGAGCTACCACGCCCGCCCCTCATCAATAAACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCCTACAACCGATTCATTAAGGAGGAAATCCAACGCATCAAGTCTATCAATCCCGATATAACCCACAGAGAAGCCTTCAGCGCAGCTGCCAAGAACTGGGCCCACTTCCCTCACATTCACTTTGGCCTCATGCCTGATCAGACTATGAAGAAGACAAATGGGCGCCAGCAGGAAGGAGACGACGTTCACATGAAAGATGGGTTTTTTGCTTCGGCAAATGTTGGTGTTTCTCCCTACTAG 651 0.4977 MSSSSSTALSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCSNLLPVNVNVRGLLLPSANQFHLSHSFYSPSHNLLEEIPNPSPNFSINQTNSSNDFSMPSRTTVDELPRPPLINKPPEKRQRVPSAYNRFIKEEIQRIKSINPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNGRQQEGDDVHMKDGFFASANVGVSPY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0548 216 PANTHER PROTEIN YABBY 6-RELATED 1 190 IPR006780 GO:0007275
Lele49g0548 216 MobiDBLite consensus disorder prediction 94 134 - -
Lele49g0548 216 FunFam Axial regulator YABBY 125 196 - -
Lele49g0548 216 MobiDBLite consensus disorder prediction 94 113 - -
Lele49g0548 216 Gene3D High mobility group box domain 125 195 IPR036910 -
Lele49g0548 216 SUPERFAMILY HMG-box 123 173 IPR036910 -
Lele49g0548 216 Pfam YABBY protein 16 180 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0548 Lele-ChrLele49 3310418 3312677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0548 27 214 C2C2-YABBY Transcription Factor Family AT4G00180 59.330 1.51e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele49g0548 YABBY 2.7e-69 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0972 53 19264716 19267112 Lele49g0548 49 3310418 3312677 CCT
Lele54g0951 54 15898992 15902440 Lele49g0548 49 3310418 3312677 CCT
Lele56g0486 56 3586911 3590271 Lele49g0548 49 3310418 3312677 CCT
Lele49g0548 49 3310418 3312677 Lele49g0548 49 3310418 3312677 ECH
Lele49g0548 49 3310418 3312677 Lele51g0568 51 3399193 3401445 hybridization
Lele49g0548 49 3310418 3312677 Lele52g0577 52 3606465 3608737 hybridization