Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0519 ATGGAGAGGCACAAATGCAAGCTTTGCTCTCGAACGTTCGACAATGGCAGAGCATTAGGTGGTCACATGAAGGCTCACTTGACCTCTTTTCCTCTTCCTCCCAAGCCCCAACCTCTGATCACTCCCTCAGCACCTTCCTTCTCTTATTCCTCTCCTTCCTCCGAAGACGACGACGGAGAAGAAGAAGTTGAAGTAGCGCCTGCTTACAACAGAGAACCTGACGACAAGGCTTTGAGTTACGGGTTGAGAGAGAATCCAAGGAAAAATTTCAGGTTCGCAGATCCTGAGTTCTCTTTTGCAGTTGATGCTGGCTCCGTCGTCCAAGATAGAGAAAGCGAGACGGAGTCAAAGAATCCGACTCGCCGGCGATCCAATCGAACCAGAAAATCCAGCGTCGGAGCTAGTCAGAAATTTGAAGTGACCAAGGCCAAGTCAAATTTGACGGAGTCACCGACGGAGCCAGAACCGGTGAGCTCGGTTTCTGATACTTCGCCGGATGAAGATGTTGCTATGTGCCTCATGATGCTTTCCAGGGACAGATGGATGAGAAACGTCGTGGAACAAGATCAAGTGGTGGAGAGATCGAAGGGACCGGAAGAGATCAAGTTGAAGAGGAAGCATCAATCTGATAACACTAAGAAAACTTCTCGATCTTCTCGAGCATTGAACACTCATCACAATACTACCTACTTTCCTGAAGAAGCAGAGACCAAAATTGCAGGTAACGATAAAATTTTCCAATGCCCATTTTGTTGCAAAGTGTTTGGTTCGGGACAAGCACTCGGTGGCCACAAGAGATCCCACCTCCTACCATCTTCGTCTTCAACCGCTATCCACTCTGCTAAATGCTCCATAGATCTCAACCTGCCAGCTCCGGCGGAAGAAGATGAACTAAGCGTGGTTTCTGATGCGTAA 915 0.4842 MERHKCKLCSRTFDNGRALGGHMKAHLTSFPLPPKPQPLITPSAPSFSYSSPSSEDDDGEEEVEVAPAYNREPDDKALSYGLRENPRKNFRFADPEFSFAVDAGSVVQDRESETESKNPTRRRSNRTRKSSVGASQKFEVTKAKSNLTESPTEPEPVSSVSDTSPDEDVAMCLMMLSRDRWMRNVVEQDQVVERSKGPEEIKLKRKHQSDNTKKTSRSSRALNTHHNTTYFPEEAETKIAGNDKIFQCPFCCKVFGSGQALGGHKRSHLLPSSSSTAIHSAKCSIDLNLPAPAEEDELSVVSDA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0519 304 SUPERFAMILY beta-beta-alpha zinc fingers 3 268 IPR036236 -
Lele49g0519 304 MobiDBLite consensus disorder prediction 129 165 - -
Lele49g0519 304 MobiDBLite consensus disorder prediction 192 225 - -
Lele49g0519 304 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 304 IPR044303 GO:0006355
Lele49g0519 304 SMART c2h2final6 4 26 IPR013087 -
Lele49g0519 304 SMART c2h2final6 246 268 IPR013087 -
Lele49g0519 304 MobiDBLite consensus disorder prediction 64 82 - -
Lele49g0519 304 MobiDBLite consensus disorder prediction 29 82 - -
Lele49g0519 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lele49g0519 304 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lele49g0519 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 268 IPR013087 -
Lele49g0519 304 Pfam C2H2-type zinc finger 246 268 - -
Lele49g0519 304 Pfam C2H2-type zinc finger 3 27 - -
Lele49g0519 304 MobiDBLite consensus disorder prediction 192 207 - -
Lele49g0519 304 Gene3D Classic Zinc Finger 177 275 - -
Lele49g0519 304 ProSitePatterns Zinc finger C2H2 type domain signature. 248 268 IPR013087 -
Lele49g0519 304 MobiDBLite consensus disorder prediction 101 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0519 Lele-ChrLele49 3096902 3097816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0519 2 299 C2H2 Transcription Factor Family AT1G02030 36.923 6.33e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele49g0519 zf-C2H2_6 7.8e-07 CL0361