Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0510 ATGTGGCCCCTGATCGGTGCCAGCCAAGCCGGCCATGGCGCTTTTTTACTTGTTCAGAACGTTAGCTTCAAGGGATTGAAAATGGTGAAGATAGAATTCGGTAGCTTTCCTGACTCTTTTAGCGTTAATTCCATTAAGGCTTATTTAGCAGAGTTCATCGCTACTCTTCTTTTCGTCTTTGCCGGCGTTGGATCAGCCATCGCTTACGGTGAACTAACGGCGGATGCAGCGTTGGATGCGCCGGGACTGGTGGCGGTGGCGGTGGCGCACGCGTTTGCCTTGTTTGTAGGGGTGGCGGTGGCAGCCAACATCTCAGGTGGCCATTTGAACCCCGCGGTTACTTTTGGATTGGCAATTGGAGGCAACATCACCATCTTAACTGGCATCATGTACTGGATTTTCCAATTGCTTGGCTCCATCGTCGCATGTCTCCTCCTCAAATTTGTTACTGGTGGAAAGAGCATTCCTACCCATGGACTAGCAGCAGGTGTGGGTGCAGGAGAAGGTGTAGTGTTTGAGATTATTGTTACTTTTGCATTGGTTTACACTGTGTATGCAACAGCGGCTGATCCCAAGAAGGGTTCTCTTGGGACTATTGCACCCATTGCAATTGGGTTCATTGTGGGTGCCAACATCTTGGCTGCCGGTCCATTTAGTGGCGGTTCAATGAACCCGGCTCGTTCTTTCGGCCCAGCTGTGGTCAGCGGCAACTTCGCCGATAACTGGATTTACTGGGTTGGGCCATTGGTCGGTGGCGGCTTGGCCGGCTTGGTCTATGGTGATATCTTCATTGGTTCATACGCTCCAGTTCCTGCGGCTGAAAGCTACCCTTAA 834 0.5132 MWPLIGASQAGHGAFLLVQNVSFKGLKMVKIEFGSFPDSFSVNSIKAYLAEFIATLLFVFAGVGSAIAYGELTADAALDAPGLVAVAVAHAFALFVGVAVAANISGGHLNPAVTFGLAIGGNITILTGIMYWIFQLLGSIVACLLLKFVTGGKSIPTHGLAAGVGAGEGVVFEIIVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFADNWIYWVGPLVGGGLAGLVYGDIFIGSYAPVPAAESYP 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0510 277 Pfam Major intrinsic protein 41 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele49g0510 277 Gene3D Glycerol uptake facilitator protein. 29 268 IPR023271 -
Lele49g0510 277 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Lele49g0510 277 SUPERFAMILY Aquaporin-like 40 265 IPR023271 -
Lele49g0510 277 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele49g0510 277 PRINTS Major intrinsic protein family signature 205 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele49g0510 277 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele49g0510 277 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele49g0510 277 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele49g0510 277 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele49g0510 277 PANTHER AQUAPORIN-8 31 265 IPR034294 -
Lele49g0510 277 TIGRFAM MIP: MIP family channel proteins 50 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele49g0510 277 CDD MIP 46 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele49g0510 277 FunFam Probable aquaporin TIP1-1 29 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0510 Lele-ChrLele49 3045248 3047183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0510 28 274 Major Intrinsic Protein MIP AT5G47450 80.972 1.74e-139 391