Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0501 ATGCCGCTGGATTCCGGAATACACCCTTTTATTCCAACCGCGTCTCCTTGGACCATATGGTTTGGTTGGCTTGTTTCACTGGATAAAACTCGAATTCAAGAGTTTTCTTTTGGACAGTCACAATTGAAGAAATCAAAGTACGTGGAGCCAACTCACAAAACGAATGGCTCTGTGAAAACGAAATTTCGATTTGAGTTTAGTAGAAGCAGAAGGGGTGTGAACAAAACGACCAAATCATTTGCCTACGTAAACAGCATCATGGTGACGTGTCTTGCGGCAGTTCTGAAGAATCTGCCACGTCAACACGCACCACTCGGTGATTGTGTCAATGCTTCCGAGGACTATGGGAGTATACCGCCGCGAAAAGCCGTCGATATGACTCGGCGGTGTTCTCATTGCAGCTACAATGGCCATAACTCAAGGACTTGCCCGAACCGCGGTGTTAAGCTCTTTGGAGTTCGATTGACTGAAGGCTCGATCCGGAAGAGTGCTAGTATGAGTAGCCTCAGCCACTATGCTGGCTCGAGCTCCGGAGCTCATCATGCTGGTTCCGTCAATCCGGGTTCGCCCGGTGACACGGCTGATCATCGTGCTGCAACCGACGGTTACGCCTCTGAGGATTTTGTTCCTGGTGTTCCGTGGACTGAGGAGGAACATAGACTGTTCTTACTTGGATTGCAGAAGCTTGGCAAAGGTGATTGGCGTGGAATTGCACGGAATTATGTCATATCAAGGACACCTACTCAAGTAGCAAGCCATGCTCAGAAATATTTCATCAGGCAAAGCAACGTGTCTAGGAGGAAAAGACGTTCAAGTTTGTTTGACATTACTGCTGATACATCAATGGCAGAACAAGACTTGCTGGCTAGTCCGCCAGAGGCTGAAACGGAAGGCAATGAACCCTTGCCAGCTCCCCCAGTCATTGATGAAGAGTGTAAATCCATGGATTCTGATTGTTCAAATGATGGAGAATCTGCCTCTTTGAAGCCAGATAGCTCACAGCCACACTCACAATTCCCGGTGCTATATCCTGCTTACTTTTCTCCTTTCGTCCCATTTCCTCTGCCTTATTTATACCGTCCAGAGCCCGCCAAGAAGGAGACAGTACATGAAGTGCTGAAGCCTACAGCAGTACATTCCAAAAGCCCCATCAATGTTGATGAATTGGTCGGCATGTCTAAACTCAGTTTAGGGGACTCTATTGGTGACTCTGGCCCTTCCTCTCTTTCCCTAAAACTCCTCAAGGGACCCTCTCGGCTGTCCGCTTTTCACGCAACTCCCTCATATGGTGATTTAGACATGAATGTCAATGCAATCCCTGCAGTTTAA 1329 0.4786 MPLDSGIHPFIPTASPWTIWFGWLVSLDKTRIQEFSFGQSQLKKSKYVEPTHKTNGSVKTKFRFEFSRSRRGVNKTTKSFAYVNSIMVTCLAAVLKNLPRQHAPLGDCVNASEDYGSIPPRKAVDMTRRCSHCSYNGHNSRTCPNRGVKLFGVRLTEGSIRKSASMSSLSHYAGSSSGAHHAGSVNPGSPGDTADHRAATDGYASEDFVPGVPWTEEEHRLFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDITADTSMAEQDLLASPPEAETEGNEPLPAPPVIDEECKSMDSDCSNDGESASLKPDSSQPHSQFPVLYPAYFSPFVPFPLPYLYRPEPAKKETVHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDSGPSSLSLKLLKGPSRLSAFHATPSYGDLDMNVNAIPAV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0501 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 262 IPR017930 -
Lele49g0501 442 MobiDBLite consensus disorder prediction 289 334 - -
Lele49g0501 442 CDD SANT 213 258 IPR001005 -
Lele49g0501 442 FunFam transcription factor MYB1R1 212 263 - -
Lele49g0501 442 ProSiteProfiles SANT domain profile. 214 262 IPR017884 -
Lele49g0501 442 SUPERFAMILY Homeodomain-like 211 263 IPR009057 -
Lele49g0501 442 SMART sant 210 260 IPR001005 -
Lele49g0501 442 Pfam Myb-like DNA-binding domain 213 258 IPR001005 -
Lele49g0501 442 MobiDBLite consensus disorder prediction 171 198 - -
Lele49g0501 442 Gene3D - 212 264 - -
Lele49g0501 442 ProSiteProfiles Myb-like domain profile. 213 258 IPR001005 -
Lele49g0501 442 PANTHER TRANSCRIPTION FACTOR KUA1 128 380 - -
Lele49g0501 442 MobiDBLite consensus disorder prediction 319 334 - -
Lele49g0501 442 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 261 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0501 Lele-ChrLele49 2991908 2996415 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele49g0501 Myb_DNA-binding 4.9e-11 CL0123