Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0498 ATGGGTGAAAAAGAGGGCCTGCGTTTGAGTCTTACCTTGAGCTTCCCCCATAATCCACCTAATCCTGTGCAACTTAATCTCCTTCCTTCTTCTGCTTCTCCTGCCGCCTCCAATCTTCACAAACCCTCTTGGAACGATGCCTTAACCTCCTCAGATCGAGATTCTGAAACATGCAGAGGCGAAGGTCGATCTTTCCTGCGAGGAATCGACGTGAATCGATTGCCTTCCAGCGTGGACTGCGAAGAGGAGGCCGGTGTTTCGTCTCCAAACAGCACGATCTCGAGCGTGAGTGGCAAGAGAAGTGAGAGGGAGCCCAACGGAGAAGATAACGACGCCGACAGAGACTGTTCTCGAGGAATCAGCGATGAAGAAGACGGTGAAACCTCCCGGAAAAAGCTCAGGCTTTCAAAAGATCAATCCGCTATTCTCGAGGAAAGCTTTAAAGAACACAATACCCTCAATCCCAAGCAAAAGTTGGCACTTGCAAAGCAGCTGGGCCTTCGATCAAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGGGCCAGGACCAAGCTGAAGCAAACTGAGGTTGACTGTGAGTTCTTGAAGAGATGCTGCGAGAATCTTACGGAAGAGAACAGACGGTTGCAGAAGGAAGTTCAGGAGCTTAGAGCACTAAAACTCTCCCCACAACTATACATGCAAATGACCCCACCCACAACCCTCACCATGTGCCCGTCATGTGAGAGAGTCGCCGTGCCACCTTACGCCGCTGCTACCGCAGTACACAGCAACCACCCGCACCCGATGGCCCAACATCACGCTCGGGCCATCCCCGTCGGCACATGGGCCACTGCTGCAGCTCCCATGGCTCACCGGCCCTTCGACGTACTGCGCCCCAGATCGTGA 888 0.5327 MGEKEGLRLSLTLSFPHNPPNPVQLNLLPSSASPAASNLHKPSWNDALTSSDRDSETCRGEGRSFLRGIDVNRLPSSVDCEEEAGVSSPNSTISSVSGKRSEREPNGEDNDADRDCSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRSRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVAVPPYAAATAVHSNHPHPMAQHHARAIPVGTWATAAAPMAHRPFDVLRPRS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0498 295 MobiDBLite consensus disorder prediction 14 51 - -
Lele49g0498 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 24 260 - -
Lele49g0498 295 MobiDBLite consensus disorder prediction 1 60 - -
Lele49g0498 295 MobiDBLite consensus disorder prediction 80 135 - -
Lele49g0498 295 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Lele49g0498 295 MobiDBLite consensus disorder prediction 101 135 - -
Lele49g0498 295 Pfam HD-ZIP protein N terminus 1 104 IPR006712 GO:0005634
Lele49g0498 295 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
Lele49g0498 295 PRINTS Lambda-repressor HTH signature 166 182 IPR000047 GO:0003677
Lele49g0498 295 PRINTS Lambda-repressor HTH signature 157 166 IPR000047 GO:0003677
Lele49g0498 295 SMART HOX_1 128 190 IPR001356 GO:0003677
Lele49g0498 295 MobiDBLite consensus disorder prediction 83 100 - -
Lele49g0498 295 Coils Coil 185 222 - -
Lele49g0498 295 Gene3D - 134 184 - -
Lele49g0498 295 FunFam Homeobox-leucine zipper protein 18 114 191 - -
Lele49g0498 295 CDD homeodomain 130 187 IPR001356 GO:0003677
Lele49g0498 295 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Lele49g0498 295 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
Lele49g0498 295 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Lele49g0498 295 SUPERFAMILY Homeodomain-like 120 187 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0498 Lele-ChrLele49 2960570 2961997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0498 1 295 Homeobox Transcription Factor Family AT4G16780 61.513 5.26e-111 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele49g0498 HD-ZIP_N 5.8e-32 No_clan