Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0493 ATGGCCAATCAAGCCGAGTTTTCCGCCCTCGAACGCATCAAATTACATCTTCTAGGTGGACTCTCTCCGCTGCCAAGTTCTCAATCTTGGTTTGAGGAAGCCAACTCATCTATTTCAACTTCTCAATCTCTCTGTTCCCAATCTTCCATTTCTGACGCTAATTCCATCTTGTCCGATTGCTTTCCTGATATCCTCGACTTCCCCACCAATCTCGTACCTTCATCACAAGATCAAACGAATCATTTTGAATTCGAGTCTAAACCCCAAATAATTGACCTCGCAACGCCAAATTCCCAAATCCAAGCTTCGCAAGTCGAAACAAGGTTTCCCAAACTCGAATCTAACACACTGGAAAGCTCTCCTGCAAACAGTTGCGTGTTGGATTTCGACCCGAGATTTCATGAATCGCAGAAGAAATCTCCTTCGAGTAGGAAACCAACGTTGCAAATCTCGCTTCCGAAGAAAACCGAGTGGATCCAGTTTGGGAATCCGGAGCAGCAAGAGGAGGCAGCCGAGGGGTTGGAGCAGAAAAACCAAAAGGAAGTCGAGAAAAGGCACTACAGAGGAGTCCGACAGAGGCCGTGGGGCAAATATGCGGCGGAGATCCGGGACCCGAACAAGCGGGGATCCAGGGTGTGGTTGGGAACATTCGACACAGCTATCGAAGCCGCCAAAGCCTACGATCGAGCTGCCTTCAAGCTTCGGGGCTCCAAGGCCATCCTAAACTTCCCTTTAGAAATAGAAACATCGAGCTCGGAGGTTAGTTCCGGAGAGGGAAAACGCCGTCGTCAAGGCGAAGAGGAGGTGGCGGAGGTGGAGGTAAAGGCGGTGGTGAAGAAGGCGAAAACTACGAGGGAATCGGAGTCTCAGGAGAAGTGTCCAAAGGACGCTCCGTTAACACCGTCTAATTGGAAGGGGTTCTGGGAGAACGATTTAAACGGGATTTTCAGTGTCCCGCCGTTATCGCCTCTCCCTCCATTGGGTTGTGCACGGCTTATGGTTGTATGA 1008 0.502 MANQAEFSALERIKLHLLGGLSPLPSSQSWFEEANSSISTSQSLCSQSSISDANSILSDCFPDILDFPTNLVPSSQDQTNHFEFESKPQIIDLATPNSQIQASQVETRFPKLESNTLESSPANSCVLDFDPRFHESQKKSPSSRKPTLQISLPKKTEWIQFGNPEQQEEAAEGLEQKNQKEVEKRHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEIETSSSEVSSGEGKRRRQGEEEVAEVEVKAVVKKAKTTRESESQEKCPKDAPLTPSNWKGFWENDLNGIFSVPPLSPLPPLGCARLMVV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0493 335 CDD AP2 186 244 IPR001471 GO:0003700|GO:0006355
Lele49g0493 335 SMART rav1_2 186 250 IPR001471 GO:0003700|GO:0006355
Lele49g0493 335 MobiDBLite consensus disorder prediction 280 300 - -
Lele49g0493 335 MobiDBLite consensus disorder prediction 170 188 - -
Lele49g0493 335 Pfam AP2 domain 186 236 IPR001471 GO:0003700|GO:0006355
Lele49g0493 335 FunFam Ethylene-responsive transcription factor 2 185 246 - -
Lele49g0493 335 ProSiteProfiles AP2/ERF domain profile. 186 244 IPR001471 GO:0003700|GO:0006355
Lele49g0493 335 Gene3D AP2/ERF domain 185 246 IPR036955 GO:0003700|GO:0006355
Lele49g0493 335 PRINTS Ethylene responsive element binding protein signature 187 198 IPR001471 GO:0003700|GO:0006355
Lele49g0493 335 PRINTS Ethylene responsive element binding protein signature 226 246 IPR001471 GO:0003700|GO:0006355
Lele49g0493 335 PANTHER DNA-BINDING DOMAIN 136 291 IPR044808 GO:0003700|GO:0009873
Lele49g0493 335 SUPERFAMILY DNA-binding domain 186 246 IPR016177 GO:0003677
Lele49g0493 335 MobiDBLite consensus disorder prediction 165 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0493 Lele-ChrLele49 2932311 2933318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0493 1 335 AP2-EREBP Transcription Factor Family AT5G47230 41.593 3.19e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele49g0493 AP2 6.7e-16 CL0081