Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0476 ATGGACCATTTGCCTTGTTTTCCTCACAAAAAGGATGCTGCCTTTGATTATCTTACTCATTTGAGCACATCATTCAATAGCAATAACATATTGAGCACTTCAACAATTGATCCTGAAAAGCATGAAAAAAAGAAAGAAAGAAGAGAAACAGAAGAGAAAATGATACAGAGGACTTGCACCCCACTTTGGCGCAATGGCCCGCCAGATAAACCAGTATTATGCAATGCATGTGGTTCTCGGTGGAGGACAAAGGGAACGCTTGCAAATTATACTCCATTACATGCTCGGACAGAAACTGATGATTGTGAGGATCAAAGGTTTTCAAGGGTAAAGAGCATATCACTAAATAAGAACAAAGAAGTGAAATTGTCTAAGAGAAAGCATAATGAAGATAATTTATTAACTGGAGTGGCTGGCCTTGATTACAAACAAGGGTTTCGAAAGGCTGCAGATGAAGATACAAGCAATAGATCAAGTTCTGGATCAGCTATCTCTAACTCAGAGAGTTGTGCTCAATTTGGTGGCACTGATGCTAGTGATTTGACAGGTCCTGCCCAGTCAATTGTCTGGGATACCATGGTGCCTTCAAAGAAGAGGACATGTGTGGGTCGTCCAAAGCAATCTTCTGTTGAGAAGCTCACAAAAGATCTGTACACTATTCTTCATGAACAACAGTCTTATTTTTCTGCATCCTCTGAAGAGGATCTTCTTTTTGAAACTGAAACACCGATGGTCTCTGTTGAGATAGGGCATGGAAGCGTTCTTATTAGGCACCCAAGCTCTATAGCTCGTGAAGAAGAGTCTGAGGCCAGCTCTCTTTCAGTTGATAACAAACAGTGCCCAACCAGTGAGGCATATTCATATTCTGGTACCGCTCATGTGCATAATGGTTATAGAGGTGTGAATTTTCCATATCAGGGGGTTCAGAAGATCAGGAGCTCTGCTGACTGA 951 0.4154 MDHLPCFPHKKDAAFDYLTHLSTSFNSNNILSTSTIDPEKHEKKKERRETEEKMIQRTCTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARTETDDCEDQRFSRVKSISLNKNKEVKLSKRKHNEDNLLTGVAGLDYKQGFRKAADEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSIVWDTMVPSKKRTCVGRPKQSSVEKLTKDLYTILHEQQSYFSASSEEDLLFETETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQCPTSEAYSYSGTAHVHNGYRGVNFPYQGVQKIRSSAD 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0476 316 Pfam GATA zinc finger 58 86 IPR000679 GO:0006355|GO:0043565
Lele49g0476 316 MobiDBLite consensus disorder prediction 32 53 - -
Lele49g0476 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 57 90 - -
Lele49g0476 316 CDD ZnF_GATA 60 98 IPR000679 GO:0006355|GO:0043565
Lele49g0476 316 PANTHER OSJNBB0038F03.10 PROTEIN 59 304 IPR044589 -
Lele49g0476 316 SMART GATA_3 52 98 IPR000679 GO:0006355|GO:0043565
Lele49g0476 316 Gene3D - 56 133 IPR013088 GO:0006355|GO:0008270
Lele49g0476 316 MobiDBLite consensus disorder prediction 36 53 - -
Lele49g0476 316 MobiDBLite consensus disorder prediction 148 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0476 Lele-ChrLele49 2841410 2843437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0476 58 312 C2C2-Gata Transcription Factor Family AT4G17570 63.707 5.42e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele49g0476 GATA 3.4e-09 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0476 49 2841410 2843437 Lele53g0305 53 2553507 2558997 CCT
Lele49g0476 49 2841410 2843437 Lele54g0301 54 2548253 2553439 CCT
Lele49g0476 49 2841410 2843437 Lele55g1186 55 18484412 18492267 CCT
Lele49g0476 49 2841410 2843437 Lele56g1137 56 14850365 14855757 CCT
Lele53g0313 53 2624880 2626457 Lele49g0476 49 2841410 2843437 CCT
Lele54g0309 54 2632903 2634486 Lele49g0476 49 2841410 2843437 CCT
Lele55g1177 55 18403073 18404653 Lele49g0476 49 2841410 2843437 CCT
Lele56g1127 56 14763932 14765512 Lele49g0476 49 2841410 2843437 CCT
Lele49g0476 49 2841410 2843437 Lele51g0492 51 2888962 2896415 hybridization
Lele49g0476 49 2841410 2843437 Lele52g0509 52 3092844 3097837 hybridization