Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0474 ATGATAAGAATATTGGTTGTCCAAACTTCAGTAGTGTCCATTTGTTCTCATGCTTTTGAATTGGTGATGGGGGTTATGGAGAATACGCTGCATTCAAAGTCATTAACCAAGGTTACATCAATCAATAACAGCAATAACGATGAAAGATCTGGGAAACCATGGACGGAAAATGGGCATTGCACTGTACCTACCCAGCTCAAATTTAAGTGCCGAAAAGTGTCTGCCGTTCGCGATTATCCTGAAGGTTGTGGACGGTTTGCGCCCAGAATTAATTTAACACAAAATGTAAATACTGCTAACATTGGTATTGGTGAAGGTACACTAGTTGAGGATAAGAGTGGTGAAGATATAAAGGATGAATTTGTTAGAGCTTCCGAGCTTGAACATGAGTCCCAACATGCTGTGTTGGTGGGCTTAGACTCTCGGACTCTCGGACAATCCAGTGACCATAGTCTGAAGAAGGAAATACCAATGATCTCATCTAAAATTGTGGGTGAGCCTCCTTTGACAAATGATGAAACTGTAAAAATGGGGTTGGTGGGCTCGGAAGATTTGGAATCCAGAAGAGCTGCAGAAGAGGTAAATTGTGATACTTCTAATATGTCACAATACTTGCATAAAAATGGCCCTTCTTCTCCAGTAGATGAGGTGGCTTTGTCAGGTCGTAAATTCTTGTCACCAAATGTAAGTATGGCTGATTCTATTGACTGTTTGGATAATGTAACAAGAAGGCATTTTCCCCGAAGACGAGTTTCAGCCACTAGAGACTTTCCCCCTTTTTGTGGACGAAATGCTCCTCGCCTTGGTAAGGATGCTTGTTTAGAGGAGATCTCTTTTCTGGATAACAAAATCATGGGTCAACAGGACTTGGCTGTGGATGACAAGGAATTGAAAAAGGTCACGGCCTCTGATGTGAAAGAAGTGGAAAAGAATGTTGAATGTAGAGATGCTTGCAATCCAGTGAATATAGTTCAAGGTGATTTTGAGGGGAATGTTATGCGGGAAGTGAATAAGTTGGATGGATCTGGAGCATCTCCTGAGATGACTTTGCTACCAACAAATTCAGGAGATGAGGACATTGCACTTCCTGATGGAAGCAATCACCATCAGACATTAACAAGTTCCGCAACAGTAGTTGAAGAAGAAAGCAGAGATGTTATACTGGTTGAGGGAACACTAGGAAAGGAGATAGTAGTTTATACAGGAGCTCAAAGCCTAGTGAGAGAGCCTCTGGGTACATCTGCTTGGCATCATAAGTCAAAAGGAAATTTCAATGAATTGCAGGCTCCATCTTGCAGGATGGTTGTACTAGGCCTGATGTCTGCATCGACATGTCCTTGGAGGAACGGTATAGGTTTTCTGAAATCTAGAATGGTTGGTGGTAAAAATGAAACAAAAGGAAAGAAAATTGATAAAAATGAAAGAAAGGGAAAGAAAATTGGTTTTTTTGAACACTTTGACAGGTCCAAAGTTGCTACCAAGTCTAAAGACTCACCAAGTTGTTCTGGGAAGAAGCCTGTAATAAAGAAAAAAGGAAGCTGTGCTGCTGAAGGTATGGGTCAACTAGTAGTTTGGGAGAATAAAGACTCTCTTGACTCAGATAAAAGTAAGGAAGAGACAAGTGTTGTCCCAAGATCCCAAGGTTTTGATGTTTACGTTCCTCCTTTTGGTCATGGAAATCTAAGTGGTAATGACAAAGACTCAAATGTGACTCGAAATAAAGTGAGGGAGACATTGCGCCTTTTCCAAGCTGTTTCTAGAAAGCTATTGCAGGAGGAAGAAGCAAAGCCAAGAGACAAAGGGAACACTAATAGGAAGGGTAGGATTGATACAGTAGCAGCTAAGATCCTTAGGGATAAAGGGAAATATGTTAACACAGGGAAGCCGATATTGGGACATGTCCCTGGGGTTGAAGTTGGTGATGAATTTCAGTACTGGGTGGAGCTTAATATTATTGGTCTTCATCGCCAGTCTCAGGGAGGCATAGATTATGTCATGCATAATGGTAAGACCCTTGCAACTAGTGTGGTTTCATCTAAGGGCTATGCTGATGAGTCGGGCAGTTCAGATGTCTTGACTTATACAGGGCAGGGAGGAAGTATGTTTAAGAATGGTAAAGAACCTGAAGATCAGAAGCTTGAGAGGGGCAATCTTGCTTTGAAGAATAGTGTTACAGAAAAGAATCCTGTCAGGGTAATACGTGGCTGTGAATCAACAGATGGAAAAAGTCGAAGATATGTTTATGATGGGCTATATGAAGTTGAGGCTTATTGGCAGGAAACGGGACCACATGGTAAGTTGGTTTTTAGGTTTCGGATGCGAAGAATCCTAGGTCAACCAGAACTTGCTTGGAAAGAAGTGAAGGAATGCAAAAAATTCAAAAAAAGAGAGGGCGTATGTGTTGATGACATTTCTAATGGGAAAGAGCCAATTCCAATATGTGCTGTGAACACAATAGATGATGAAAATCCCCCACCATTTGAATACACAACTAGAATGATATATCCTATTTGGTGTAATCCCATTCCTCCAGAGGGATGTAGTTGTACAAATAGATGCTCTGACACTGACAAATGTTCTTGTGCGGTAAAAAATGGGGGAGAGATCCCATACAATCATAATGGGGCCATTGTAGAAGCAAAGCCTCTTGTGTTTGAGTGTAGTGCTTCTTGCAAGTGTCCTTCGACATGTCATAACAGAGTCAGCCAACATGGCATAAAGTTTCAACTTGAAATTTTTAAAACCAAGACAAGAGGATGGGGTGTGAGATCCCTAAATTCCATCCCTTCAGGAAGTTTTATATGTGAATATATAGGAGAGCTTCTTGAAGAGAAGGAAGCAGAACAAAGAACTGGTAATGATGAATATCTGTTTGATATCGGGAATAACGCCATTAATACTCTTTGGGATGGACTTTCAAGCCTAATGCCTGAGGCACAGTCAAGTTCTTGTGAAATCGTGGAAAATAGTGGCTTCACCATTGATGCTGCTCAGTATGGCAATGTTGGGAGATTTATCAACCATAGTTGCTCCCCTAATCTTTATGCTCAAAATGTTCTTTATGATCATGACGACAAGAGAATACCTCACATAATGTTTTTTGCTGCTGAAAACATTCCTCCTCTGCAAGAGCTGTGTTATGATTACAATTATATGATAGATCAAGTTCATGATTCTTATGGCAATATAAAGAGGAAGGACTGCTTTTGTGGTTCTTCAGAGTGTAATGGTAGGCTGTATTGA 3243 0.4086 MIRILVVQTSVVSICSHAFELVMGVMENTLHSKSLTKVTSINNSNNDERSGKPWTENGHCTVPTQLKFKCRKVSAVRDYPEGCGRFAPRINLTQNVNTANIGIGEGTLVEDKSGEDIKDEFVRASELEHESQHAVLVGLDSRTLGQSSDHSLKKEIPMISSKIVGEPPLTNDETVKMGLVGSEDLESRRAAEEVNCDTSNMSQYLHKNGPSSPVDEVALSGRKFLSPNVSMADSIDCLDNVTRRHFPRRRVSATRDFPPFCGRNAPRLGKDACLEEISFLDNKIMGQQDLAVDDKELKKVTASDVKEVEKNVECRDACNPVNIVQGDFEGNVMREVNKLDGSGASPEMTLLPTNSGDEDIALPDGSNHHQTLTSSATVVEEESRDVILVEGTLGKEIVVYTGAQSLVREPLGTSAWHHKSKGNFNELQAPSCRMVVLGLMSASTCPWRNGIGFLKSRMVGGKNETKGKKIDKNERKGKKIGFFEHFDRSKVATKSKDSPSCSGKKPVIKKKGSCAAEGMGQLVVWENKDSLDSDKSKEETSVVPRSQGFDVYVPPFGHGNLSGNDKDSNVTRNKVRETLRLFQAVSRKLLQEEEAKPRDKGNTNRKGRIDTVAAKILRDKGKYVNTGKPILGHVPGVEVGDEFQYWVELNIIGLHRQSQGGIDYVMHNGKTLATSVVSSKGYADESGSSDVLTYTGQGGSMFKNGKEPEDQKLERGNLALKNSVTEKNPVRVIRGCESTDGKSRRYVYDGLYEVEAYWQETGPHGKLVFRFRMRRILGQPELAWKEVKECKKFKKREGVCVDDISNGKEPIPICAVNTIDDENPPPFEYTTRMIYPIWCNPIPPEGCSCTNRCSDTDKCSCAVKNGGEIPYNHNGAIVEAKPLVFECSASCKCPSTCHNRVSQHGIKFQLEIFKTKTRGWGVRSLNSIPSGSFICEYIGELLEEKEAEQRTGNDEYLFDIGNNAINTLWDGLSSLMPEAQSSSCEIVENSGFTIDAAQYGNVGRFINHSCSPNLYAQNVLYDHDDKRIPHIMFFAAENIPPLQELCYDYNYMIDQVHDSYGNIKRKDCFCGSSECNGRLY 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0474 1080 SUPERFAMILY SET domain 791 1051 IPR046341 -
Lele49g0474 1080 SMART set_7 908 1056 IPR001214 GO:0005515
Lele49g0474 1080 CDD SET_AtSUVH-like 825 1051 - -
Lele49g0474 1080 Gene3D SET domain 796 1080 IPR046341 -
Lele49g0474 1080 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 467 1074 - -
Lele49g0474 1080 SMART G9a_1 627 779 IPR003105 -
Lele49g0474 1080 ProSiteProfiles Pre-SET domain profile. 845 905 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele49g0474 1080 Pfam SET domain 919 1050 IPR001214 GO:0005515
Lele49g0474 1080 ProSiteProfiles YDG domain profile. 632 775 IPR003105 -
Lele49g0474 1080 Pfam Pre-SET motif 804 900 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele49g0474 1080 ProSiteProfiles Post-SET domain profile. 1064 1080 IPR003616 -
Lele49g0474 1080 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 21 1080 IPR025794 GO:0016571
Lele49g0474 1080 SUPERFAMILY PUA domain-like 614 788 IPR015947 -
Lele49g0474 1080 Pfam SAD/SRA domain 631 779 IPR003105 -
Lele49g0474 1080 Gene3D - 614 795 IPR036987 -
Lele49g0474 1080 ProSiteProfiles SET domain profile. 908 1050 IPR001214 GO:0005515
Lele49g0474 1080 SMART preset_2 801 892 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0474 Lele-ChrLele49 2827144 2830966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0474 569 1079 Su(var)3-9 homologs AT5G04940 40.566 1.31e-114 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele49g0474 SAD_SRA 3.1e-47 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0474 49 2827144 2830966 Lele51g0491 51 2884773 2888432 hybridization
Lele49g0474 49 2827144 2830966 Lele52g0508 52 3087475 3089689 hybridization