Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0473 ATGGAACGTCATGCTAAATACCGAGTTGGCCTTGTTTGCGTGATGCTGCTCTTCCCTGTGCTCTGCATCTCACAAGACTTTACATCCTCCAGAGCTACTTATTATGGTAGCCCTGATAGCTATGGAAATCCAAGGGGAGCTTGTGGGTATGGCGAATATGGAAGGAGTGTGAATGATGGGAGTGTTGCAGGCGTCTCTGGACTTTGGAAGAAAGGCTCTGGTTGTGGTGCTTGCTACCAAGTGAGGTGTACGAATGCACAATACTGCGACGAATATGGGTCATTGGTAGTGGCAACTGACTACGGTGAAGGAGACAGAACAGACTTCGTGATGAGTCCGCGTGCTTACTCAAGAATGGGACGAAGTCCTGAAGCATCGGCACAACTGTTGAAATACGGCGTCGTTGATGTCCAGTACACAAGGGTGCCCTGCGCTTACGCCGGCGCCAACACGCTCATCAGAATCCACGAGTCCAGCAGATACCCAGACTACCTTGCTCTCGTCGTTCTCTACGTGCCTGGACAAATCGATGTCGCTTCTATCGACATATATCAGGTTGATCGAAATGAATGGAGGACGATGAGAAGAGCGTTTGGAGCAGTGTTTGACATAGTTGACGCCCCACGTCAACCAATCATTGTGAGACTGCAGGTGATTGGGAGCGCAGGGCGTTATTCGGTACAATCCAAGAGTGCCATTCCCAGTGATTGGAAGATTGGAGTTTCTTACGACACCCAGCTTCACATAGATTAA 753 0.4967 MERHAKYRVGLVCVMLLFPVLCISQDFTSSRATYYGSPDSYGNPRGACGYGEYGRSVNDGSVAGVSGLWKKGSGCGACYQVRCTNAQYCDEYGSLVVATDYGEGDRTDFVMSPRAYSRMGRSPEASAQLLKYGVVDVQYTRVPCAYAGANTLIRIHESSRYPDYLALVVLYVPGQIDVASIDIYQVDRNEWRTMRRAFGAVFDIVDAPRQPIIVRLQVIGSAGRYSVQSKSAIPSDWKIGVSYDTQLHID 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0473 250 Pfam Expansin C-terminal domain 154 234 IPR007117 -
Lele49g0473 250 SUPERFAMILY Barwin-like endoglucanases 13 148 IPR036908 -
Lele49g0473 250 Gene3D - 146 249 IPR036749 -
Lele49g0473 250 Pfam Lytic transglycolase 62 139 IPR009009 -
Lele49g0473 250 PANTHER EXPANSIN-B3 18 247 - -
Lele49g0473 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Lele49g0473 250 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Lele49g0473 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Lele49g0473 250 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Lele49g0473 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Lele49g0473 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Lele49g0473 250 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Lele49g0473 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Lele49g0473 250 Gene3D - 21 145 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0473 Lele-ChrLele49 2824412 2825544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0473 11 247 Expansin Gene Family AT4G17030 55.042 2.72e-94 275