Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0471 ATGCCAGGTGTACCAATGGAACTTCATTCTAGATACCAAATTGGCCTTACTTGCGTGCTGATTCTCTTACCTGCACTATGTTTATCCCTAGGCTTCACAGACTCCAGAGCCACCTTTTATAGTACCTCCGATGGCAATGGAACCCCAACCGGAGCTTGTGGATATGGAGATTACGGCAGCACTGTGAACTCTGGGAGGGTTACAGGCGTGTCTGGCTTATGGAGAGGTGGCGCTGGATGCGGTGCTTGCTACCAAGTAAGGTGCAAGAATTCAAGATTATGTGATGACTACGGCACGATGGTGGTGGCCACAGACTACGGTGCAGGAGACAGAACAGACTTCATAATGAGTCCAAATGGTTTCTCAAAAATGGGAAGAGACCCACTTGCATCAGATGTGCTCAAGGGATTCGGCGTCTTAGACATCGAATACAGGAGGGTACCCTGCATTTATGATGGCTACAACGTGAAGATCAAAATCCACGAGTCAAGCAATTACCCAGAGTACCTTGCTATTGTCCTTCTCTACGTGCCTGGAATGAACGACGTCACTGCCATTGAGATATATGACAATGATCGCCATGAATGGAAGCCTATGAGAAGAGTATATGGGGCAGTGTTTGATATAGTGGGCGCACCAAGTGGACCATTGATGCTGAGGCTGCAATTCAGTGGAAGAACTGGTTGGGTTCAGTCGTCCAAGAGCGCTATTCCTGGAGATTGGAAGATTGGAGCTTCTTATGACTCTCAAGTTCATGTCTAA 762 0.4764 MPGVPMELHSRYQIGLTCVLILLPALCLSLGFTDSRATFYSTSDGNGTPTGACGYGDYGSTVNSGRVTGVSGLWRGGAGCGACYQVRCKNSRLCDDYGTMVVATDYGAGDRTDFIMSPNGFSKMGRDPLASDVLKGFGVLDIEYRRVPCIYDGYNVKIKIHESSNYPEYLAIVLLYVPGMNDVTAIEIYDNDRHEWKPMRRVYGAVFDIVGAPSGPLMLRLQFSGRTGWVQSSKSAIPGDWKIGASYDSQVHV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0471 253 Pfam Expansin C-terminal domain 156 238 IPR007117 -
Lele49g0471 253 Pfam Lytic transglycolase 68 143 IPR009009 -
Lele49g0471 253 SUPERFAMILY Barwin-like endoglucanases 19 152 IPR036908 -
Lele49g0471 253 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Lele49g0471 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Lele49g0471 253 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lele49g0471 253 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Lele49g0471 253 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Lele49g0471 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 249 IPR007117 -
Lele49g0471 253 PANTHER EXPANSIN-B3 23 252 - -
Lele49g0471 253 SUPERFAMILY PHL pollen allergen 155 249 IPR036749 -
Lele49g0471 253 Gene3D - 151 253 IPR036749 -
Lele49g0471 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 154 IPR007112 -
Lele49g0471 253 Gene3D - 28 149 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0471 Lele-ChrLele49 2818488 2820123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0471 19 251 Expansin Gene Family AT4G17030 52.119 7.35e-83 246