Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0469 ATGCCCAAGGCCTCTCCAATAGAATCTACAAATACCCTTCTCATCTTTGACGCTAAACCAACCGTGTCAGCGCTATGGAGAGGAGGTGCTGGGTGCGGTGCTTGCTACCAAGTAAGGTGTAAGAATCCAAGATTATGCAATAGCTACGGCACGACGGTCGTGGCAACGGACTACGGTGCAGGAGACAGAACAGACTTCATTATGAGGCCAGTTGCTTTAGCAGATATGGGACGAAATCCGAGAGCATCGGAAGAGCTCAAGAAATACTGCGTCGTAGACATTGAATACCGAAGGGTGCCCTGCACATTTGCTGGCTACAACGTGCGTATCAAGATCCACGAGTCCAGCAGATACCCCGATTACCTTGCTCTTGTCATTCAATACGTTCCTGGAATGAGCGACGTCACTGCCGTTGAGATATATCAGAATGATCGCCATGAGTGGCGGCCACTGAGAAGAACGTATGGGGCAATGTTTGATATAGTTGGGGCGCCACGTGGACCGTTGATGCTGAGGCTGAGATTCAGTGGTACAACAGGTTGGGCTCAGTCGATCAAGAGTGCAATTCCTGGTGATTGGAAGAGTGACGAGCAACGTTACGTTAATCATATGATGGACTTTGCAAGTGATCGGTTTGACACTGAACGGAGAAGGAAGAAAATAATACGAGTCGAAGCCTGGAAAACCCACACAGGAGAAAGAGAGGAGGATTTGGTGTTTCGTGAATCAGGCAGCACAGAACTCCTTAAAGCCGTTGATCTAATTGACTACTCAATGGAACTTCATTCTAAATCCCAAGTTGGCCTTGCTTGCGTGCTGCTGCTCCTACCCGCACTATGTCTATCCCAAGGGTTCACAGACTCCAGAGCCACCTATTATAGTACCCCCGATGGCTATGGAACTCCAACTGGAGCTTGTGGATATGGAGATTACGGCAGAACTGTGAACTATGGGATGGTTGCAGGCGTGTCTGGCTTATGGAGAGGTGGCGCTGGATGCGGTGCTTGCTACCAAGTAAGGTGCAAGAATTCAAGGTTATGCAATAACTATGGGACTATGGTGGTGGCAACAGACTACGGTGCAGGAGACAGAACAGACTTCATAATGAGTCCAAATGCTTTCTCAAAACTGGGACGAACTCCAAGTGCATCAGACGAGCTCAGGAAACAGGGCACCGTTGACATCGAATACAGGAGGGTACCCTGTACATATGAAGGCTACAACGTGCGTATCAAGATCCACGAGTCCAGCAATTACCCTCACTACCTTGCTCTTGTTATTCAATACGTACCTGGCATGAGCGACGTCACTGCCGTTGAGATTTATGATAATTATAGCCATCAATGGAAGCCTATGAGAAGATCGTACGGGGCAGTGTTTGATATAGTTGGCGCACCAAGTGGACCATTGAAGCTGAGGCTGCAATTCAGTGGAAGAACAGGTTGGGTTCAGTCCACCAAGAGTGCAATTCCTAAGGATTGGAAGATTGGAGCTTCTTACGACTCTCAAGTTCATGTCTAA 1521 0.4832 MPKASPIESTNTLLIFDAKPTVSALWRGGAGCGACYQVRCKNPRLCNSYGTTVVATDYGAGDRTDFIMRPVALADMGRNPRASEELKKYCVVDIEYRRVPCTFAGYNVRIKIHESSRYPDYLALVIQYVPGMSDVTAVEIYQNDRHEWRPLRRTYGAMFDIVGAPRGPLMLRLRFSGTTGWAQSIKSAIPGDWKSDEQRYVNHMMDFASDRFDTERRRKKIIRVEAWKTHTGEREEDLVFRESGSTELLKAVDLIDYSMELHSKSQVGLACVLLLLPALCLSQGFTDSRATYYSTPDGYGTPTGACGYGDYGRTVNYGMVAGVSGLWRGGAGCGACYQVRCKNSRLCNNYGTMVVATDYGAGDRTDFIMSPNAFSKLGRTPSASDELRKQGTVDIEYRRVPCTYEGYNVRIKIHESSNYPHYLALVIQYVPGMSDVTAVEIYDNYSHQWKPMRRSYGAVFDIVGAPSGPLKLRLQFSGRTGWVQSTKSAIPKDWKIGASYDSQVHV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0469 506 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 303 407 IPR007112 -
Lele49g0469 506 PRINTS Expansin/Lol pI family signature 488 502 IPR007118 GO:0005576
Lele49g0469 506 PRINTS Expansin/Lol pI family signature 284 299 IPR007118 GO:0005576
Lele49g0469 506 PRINTS Expansin/Lol pI family signature 390 406 IPR007118 GO:0005576
Lele49g0469 506 PRINTS Expansin/Lol pI family signature 323 341 IPR007118 GO:0005576
Lele49g0469 506 PRINTS Expansin/Lol pI family signature 449 463 IPR007118 GO:0005576
Lele49g0469 506 Gene3D - 278 402 IPR036908 -
Lele49g0469 506 Gene3D - 18 101 IPR036908 -
Lele49g0469 506 Pfam Expansin C-terminal domain 409 491 IPR007117 -
Lele49g0469 506 Pfam Expansin C-terminal domain 108 190 IPR007117 -
Lele49g0469 506 SUPERFAMILY PHL pollen allergen 107 196 IPR036749 -
Lele49g0469 506 SUPERFAMILY Barwin-like endoglucanases 24 105 IPR036908 -
Lele49g0469 506 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 421 502 IPR007117 -
Lele49g0469 506 PANTHER EXPANSIN-B3 275 505 - -
Lele49g0469 506 SMART dpbb_1 319 397 IPR007112 -
Lele49g0469 506 SMART dpbb_1 21 96 IPR007112 -
Lele49g0469 506 Gene3D - 403 503 IPR036749 -
Lele49g0469 506 Gene3D - 102 200 IPR036749 -
Lele49g0469 506 SUPERFAMILY Barwin-like endoglucanases 272 406 IPR036908 -
Lele49g0469 506 Pfam Lytic transglycolase 320 397 IPR009009 -
Lele49g0469 506 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 23 106 IPR007112 -
Lele49g0469 506 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 120 201 IPR007117 -
Lele49g0469 506 SUPERFAMILY PHL pollen allergen 408 502 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0469 Lele-ChrLele49 2808145 2812904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0469 272 504 Expansin Gene Family AT4G17030 51.271 1.81e-78 244