Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0457 ATGACTTCTAGCGTCGAAGGAAGTGATTTAGCAGAGGTATCTTGTGAGTCTGCAACAACCATGAACTTATTTCCTACCAAGGAGAACGACAGAACACCACAAAAATTTTCCACAATGAGCTTATTTCCGCATCTCTCCACAGAAGAGATTCCAAATATGGCAAATTCCAGTGTATCTAAGCCTGTCACCCAGGAACCTAGAGCTGCACAGATGACAATCTTTTATGGTGGGCAAGTTGTCGTGTTCGATGATTTTCCTGCCGAAAAATTCATGGAGATCATGGCGTTTGCCAGCAAAGGAACATCCCCTGTACAGAACTGCTTTGCTTATGCTTTTCCTCAGAACCAGCCATCGTTTCCTCATAATTCAACTAGATTTTCTTCTGATTCCCAAGGGCCAGTTTCTCCTAATATTTGCAACACTTCAGTTCAAGGGCGCCCTCAGTCACCATCTGGACCTGTGGTTGCTGACCTTCCGATTGCTAGGAAAGCTTCACTTCATCGGTTCTTAGAGAAGAGGAAGGACAGGATTGCTGCTAGAGCACCGTATCAAACAAGCAGCCCCATGGCGGCTCCAAATAAGTCAACCGAATCTATGACATTGCTTGAATTGGCTGCAAAGTCGTCCCACCTCTGA 636 0.4544 MTSSVEGSDLAEVSCESATTMNLFPTKENDRTPQKFSTMSLFPHLSTEEIPNMANSSVSKPVTQEPRAAQMTIFYGGQVVVFDDFPAEKFMEIMAFASKGTSPVQNCFAYAFPQNQPSFPHNSTRFSSDSQGPVSPNICNTSVQGRPQSPSGPVVADLPIARKASLHRFLEKRKDRIAARAPYQTSSPMAAPNKSTESMTLLELAAKSSHL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0457 211 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 194 IPR040390 -
Lele49g0457 211 SMART tify_2 64 99 IPR010399 -
Lele49g0457 211 Pfam Jas motif 159 184 IPR018467 -
Lele49g0457 211 Pfam tify domain 66 98 IPR010399 -
Lele49g0457 211 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0457 Lele-ChrLele49 2749960 2751305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0457 19 207 Tify Gene Family AT1G19180 38.424 2.91e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele49g0457 tify 2e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0457 49 2749960 2751305 Lele51g0475 51 2798070 2798901 hybridization
Lele49g0457 49 2749960 2751305 Lele52g0493 52 2991882 2993154 hybridization