Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0450 ATGTATAGCGGCACGGGTGTGGCAGGAAGAACTCGATCTAGACAAGGAATCACCGGAAAACAATACTTTGAGAATAAGTGTAGGAAACATCATGAGGTTGAGGGAATTGCATCTCAAGAAGAATGGTGCTCTAGTGATACTGTATCTGACGATGGTAACGACGACGACGTGATTTTGATCGAAGACACTATACCAGATGATGAAGCCACTATATCAGATGATGAAGACACTATATCAGATGATAACAGTGAGGAGGACTCAGGAAGAACTCAGCCTAGACAAGCACTTATTGAGAAGGCTGATGAAATTGGGTCACAAGATACTGAGAAGGGTGATGAAATTGGGTCTCAAGAAGAAAGGTGTCCAATCGACACTGGTTCTTCTGATGGTGGTGTTGATTTGTTTTCAATTGAACACGGTGAAGATGATGAAGCTACACCGCATGGTGACGATGACGGCAGGAAGAGCAGGTATATTGCTGGGAGAACACGATCCCATTTTCGTCCTTCAAAATTTAGAAACACCAAAGCAGGGACATTTAGCAATCCCCTTTGCCTTGACAATGAGGAAGAGGAGAATGAAACAATAAGAAGTTGCAACCTCATCCGTCAGGAGTCTCTCCACAATGTTCAAAGAATTCCAAAAGTTACCCTTAAACGGAGAAGAAAAGTGTTTGATGGTTTCAAGATTCTTCCGGAGCATCTCCATGGTGAGGGGGCGATGCTTCGTGAGAACTCCGCTTCCACAAGTGGTGAGGAAGGAAATCCGAAAGTTATGAGGAAGAGACTTGAGGTGTCACAGCCACTAGAGAAATTAGAGTCTGTTATTGAATTAGATGTACTATGGCGTGAGGCCAACAAATGTCGCCGTGATTGCGATGATGAGGACGGAATTCCAGAAGTAACCAAGACATCTCAATCATCAAAGTGTACTCTTGGTCTTGGGACTAAGGCATCACAGCCTCTGGAGAAATTAGAGTCTGAGAATGAATTAGATGTATTATGGGGTGAGATGGCCGAAGCTCTCCGTAATGAGGGCAGAATTCCAGAAGTGACCAAGACATCTCTATCATCAAAATGTACTCTTGTGACTAAGGCGTCACAGCCTCTTGAGGAATTAGAGTCGGAGGAAGAATATCTATGGGATGAGATGGACAGGTGTCTTCAAAGTTGTAAAGAAGATAATTCTGTTGAGGTTGAAAATGGTGAATGTGAAGACCCATGTCCTGAAGGTGAAGTTAGTGTAACTACTCGTTGTGCACGAGGGGATCATGATCTTATAGTGAACGAGGAAATTGGAGAATTTTGCAAACATTGCCTACATTTGACTCGGGAAATCAAATATATTGACCCACAGTTTGGCAAAAATCCATCGGGAAAATCACGTTGGAGATACTCTCCCCGTTCGGAGGATGCCAACGACTCTTTCTCTAGTGACCCTGAGCATGAAAGTTCTGGTTGTGATGATAACTCTTCCGGGTCTGTTATCTATACTTCCACTGGAACTGTGTGGGATATAATTCCAAGAGCGAAAAGGAGTATGTACGATCATCAACAAGAAGCTTTTGAATTTCTTTGGACCAACTTAGCTGGTGGACTATTTCTTGAGGAGTTGGAAAAGCAGTTAGATTTTGCTGGTGGAAGTGGCTGCATTATATCACATGCTCCTGGCACAGGCAAAACTTTCCTGACCATTGTCTTTCTCAGGGCTTTCATGAGCAGATATCCAAATTGCAGACCCCTGATCATAGCTCCAACCAACATTCTCCACACATGGGAGAAGGAGTTAAAGAAGTGGGAGAAAGTAGGTGTTCCCGTTCCTTTTCACAATTTGAACAAGCCAGATCTCTCCGGAGAGGAGACTGAATCTGCCATTATCCGTCTTCGGAGGCACGGTGGTCGTCGTCGTCGTCGTCATGGTGCACACAAGAAGATTGAAATCCGTGGGGCGAAGGTCTATTCCTGGAAAGAGGCTACTAGCATCTTAGGAATTAGCTACAATTTGTTTGATAGGCTTTCTAGAAAGGGCTCTGATGATGTAAAGAAAGCCCTTTTTGAACTCCCAGGGTTAGTAGTTCTTGATGAAGGTCACACCCCTCGCAATGATAGGAGTCTCATATGGGAAGCCTTGTCAAAGATTGAGACAAAGAGACGCATCATTCTCTCCGGTACCCCTTTTCAAAACAATTTCAAGGAGCTTTACAATACCCTCCGCTTGGCCAAGCCAAGATTTGTAGAATTGAAGCAGTGTACCAGATGGAATTTGGAATTTCTCCTAAAATCTTATGACAGAGTGGATAGTGATAGGGAAAAAACTCAGGTAATTGCCAAAATCAGAGACGTGATCAAACCATTTGTGCATGTGCATAAGGGTGCCGTACTACAAGAGAGTCTTCCTGGGTTGAGGGAATCGGTGATTAGTTTAAATCCATCCCAGACGCAGATGTCAGTTTTTGATTACATTCAGCAGTTAAGGAGGATCCAAATTCAGGCCAAAGAGGGACCCTCTACCTGGTTTAAATTTGAACATTTGATGTCTGTAGCTTCTGTTGATCCTTCGCTTCTTGTTGCTGAGCTCACTAACTTACCAGAAAGAGAGAGAGCAAAATTGAATGCTATATTAGAAAGACTAGAATCGTCCCCAGAGGATGGAGTGAAAACCAAGTTTGTTATGGACTTCATCCGGCAAAGCCAGCTCAGGAAGGAAAAAGTTCTGATTTTTAGTCAATATGTTGCTCCACTGGTCTTTCTGGCAAACCGGATCAAATCTCGCTTTGATTGGAAAGAAGGGGAACAGATGATGGTAATTCATGGAAAGACCCATGAAGTGATACGTCAAGCGTGGATAGATTCATTCAATGATCCCAGAAGCAAAGCGAGGGTAATGCTAGCATCAACCAAGACATGTTATGAAGGGATCAATCTGGTTGGTGCTTCAAGGGTTATTTTGCTGGATACGTTATGGAATCCCTCAGCAGAAAGGCAGGCTGTGTCTCGCGCTTATCGGATTGGACAGAAGAAAATTGTGTACACTTACCGGCTGATAACTGCAGGGACATGGGATCAACAGAAGCTTTATATTCAAGCTGAGAAGGATCAGTTGTCTGAGATGGTGTTTTTCGGTTCCAACGAAGCTGGCCATCGCCAGAATACCTCACCTGTTGGTTTTGAAGATAAGCTTTTGGAAAAGATGGGACGTCAATTTGGAACAAAAATCACTAAGAGGGGAGTTACAATTTTGTTTGAAAGTGAAAAGTAG 3258 0.4346 MYSGTGVAGRTRSRQGITGKQYFENKCRKHHEVEGIASQEEWCSSDTVSDDGNDDDVILIEDTIPDDEATISDDEDTISDDNSEEDSGRTQPRQALIEKADEIGSQDTEKGDEIGSQEERCPIDTGSSDGGVDLFSIEHGEDDEATPHGDDDGRKSRYIAGRTRSHFRPSKFRNTKAGTFSNPLCLDNEEEENETIRSCNLIRQESLHNVQRIPKVTLKRRRKVFDGFKILPEHLHGEGAMLRENSASTSGEEGNPKVMRKRLEVSQPLEKLESVIELDVLWREANKCRRDCDDEDGIPEVTKTSQSSKCTLGLGTKASQPLEKLESENELDVLWGEMAEALRNEGRIPEVTKTSLSSKCTLVTKASQPLEELESEEEYLWDEMDRCLQSCKEDNSVEVENGECEDPCPEGEVSVTTRCARGDHDLIVNEEIGEFCKHCLHLTREIKYIDPQFGKNPSGKSRWRYSPRSEDANDSFSSDPEHESSGCDDNSSGSVIYTSTGTVWDIIPRAKRSMYDHQQEAFEFLWTNLAGGLFLEELEKQLDFAGGSGCIISHAPGTGKTFLTIVFLRAFMSRYPNCRPLIIAPTNILHTWEKELKKWEKVGVPVPFHNLNKPDLSGEETESAIIRLRRHGGRRRRRHGAHKKIEIRGAKVYSWKEATSILGISYNLFDRLSRKGSDDVKKALFELPGLVVLDEGHTPRNDRSLIWEALSKIETKRRIILSGTPFQNNFKELYNTLRLAKPRFVELKQCTRWNLEFLLKSYDRVDSDREKTQVIAKIRDVIKPFVHVHKGAVLQESLPGLRESVISLNPSQTQMSVFDYIQQLRRIQIQAKEGPSTWFKFEHLMSVASVDPSLLVAELTNLPERERAKLNAILERLESSPEDGVKTKFVMDFIRQSQLRKEKVLIFSQYVAPLVFLANRIKSRFDWKEGEQMMVIHGKTHEVIRQAWIDSFNDPRSKARVMLASTKTCYEGINLVGASRVILLDTLWNPSAERQAVSRAYRIGQKKIVYTYRLITAGTWDQQKLYIQAEKDQLSEMVFFGSNEAGHRQNTSPVGFEDKLLEKMGRQFGTKITKRGVTILFESEK 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0450 1085 MobiDBLite consensus disorder prediction 464 486 - -
Lele49g0450 1085 MobiDBLite consensus disorder prediction 62 82 - -
Lele49g0450 1085 Gene3D - 496 787 IPR038718 -
Lele49g0450 1085 Gene3D - 799 1078 IPR027417 -
Lele49g0450 1085 SMART ultradead3 510 748 IPR014001 -
Lele49g0450 1085 CDD SF2_C_SNF 862 1015 - -
Lele49g0450 1085 Pfam SNF2-related domain 547 833 IPR000330 GO:0005524|GO:0140658
Lele49g0450 1085 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 541 743 IPR014001 -
Lele49g0450 1085 SMART helicmild6 915 1004 IPR001650 -
Lele49g0450 1085 Pfam Helicase conserved C-terminal domain 888 1004 IPR001650 -
Lele49g0450 1085 MobiDBLite consensus disorder prediction 455 493 - -
Lele49g0450 1085 MobiDBLite consensus disorder prediction 62 135 - -
Lele49g0450 1085 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 869 1060 IPR001650 -
Lele49g0450 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 762 IPR027417 -
Lele49g0450 1085 MobiDBLite consensus disorder prediction 83 119 - -
Lele49g0450 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 689 1046 IPR027417 -
Lele49g0450 1085 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 368 1071 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0450 Lele-ChrLele49 2697196 2701607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0450 902 1050 RAD5 or RAD16-like Gene Family AT1G11100 34.228 2.03e-15 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele49g0450 SNF2_N 3.9e-27 CL0023