Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0432 ATGTCTATCTGGGTACGATTATCTGCATGCATGTGTCTTACTTTTGAGCTGCTTTGCTTTTTCCTCTTTTACGAATTGCTATTTCCTCTTTGGGAGATGTCACCCGAGCGTTTAATGACCAATTGGGTAGGGTCTGAGAACGATGCCAAACCAGCTATGGTTTGTACTGCCAATGATTTACAAAGCTGGAAAGATTTTCCCAAGGGACTCAGGGTTCTTCTCCTTGATGGGGACACCAATTCTGCTGCCGATTTAAGATCAAAACTCGAAGCCATGGGCTATATTGTTTCTATATTCTGCAATGAGAACGAAGCCTTGTCAGCGATTTCAAGCAAACCTGAAGGGTTCCATGTTGCCATTGTGGAGGTTCGTACAAGCAGTAACCAGGGATGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACGACCTTTGCCTCAGCAGCATGATGAAGTGTATAGCACTTGGCGCGGTCGAGTTCCTAAGAAAACCACTCTCAGAGGAAAAGCTCAGGAATATCTGGCAGCATGTGGTTCACAAGGCATTTAATGCTGGGGCGACCGTCCTGCCTGAATCGCTAAAACCCGTCAAAGAATCTGTAGTATCAATGTTGCAGCTCCAAACAGACAATAAGGAACAGCAAAGTAAAATCTCTATAGATATAGAGAAAGTATCAAGGTTTAGCGAAAATGACCATGAGTTGTCATCTGGGAGTGATAATAAATACCCAGCTCCTTCAACTCCACAATTAAAACAGGGGGCAAGATTACTGGATGATGGAGATTGCCATGAACAGAGTCATTGCTTGACTGAAAAAGAAAGTGGAGAACTGGGTGGGGAAACTATATCTGTCGAAACCACATGTGGGAATTCAAATTCTGAGGGTGCCACACCTCAACCAAGTAAGCCTGAAACGACCGAAATCAAGAAGGAAGAGGACTTTGCCAATGGTTCTAAGAGTGAGAGTGATGTTTCTACACATAGTCATGATGGAAATTTTGTCAGCAGCAATGGTGATAGTACTCCATCTCCAAAAAAAGTACGTGCTCTCAGTGATGCATGCGAGATCACAGCAAATAGAAAGAAATCGAAGAAGATGAAGGTAGACTGGACACCGGAACTGCACAACAAATTTGTTCAGGCAGTGGAACAACTAGGTATCGATCAAGCCATACCTTCTCGAATACTGGAGATTATGAAAGTGGAGGGCTTGACCAGGCATAATGTGGCCAGCCATCTTCAGAAATATAGAATGCACAAGAGACATATTTTGCCCAAGGAAGAAGATCGAAGGTGGCCAAGTCAAAGAGATATGATGCAAAGGAGCTATTATGTACCAAGACCAATTATGGCCTATCCTCCATATCATTCTAATCACACCTTATCTCCCGCTCCTATGTATCCTATGTGGGGACAACCGGGAAGTCAACCGGCCGGTGCACAGATGTGGGGTCCACCTAACTATCACCTGTGGCAGCCTTTTCCAGGGATGCATGCAGAAGCATGGGGTTGTCCCGTGTTGCCACCTTCTCAAAATCCTTGTATTTCTCACATTCAACATATGCCTGTCTTGCACAGGGCTAATAACATTGAGTATAATTCTAGCATGCCTCCGAGTTCGCTGGAGCATCATCCGGCAGATGAAGTTGTTGACAAGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTGCCCTTGCCCTTAGGGCTGAAACCTCCTTCCACAGATAGTGTATTGGCTGAACTCTCTAGGCAAAGCATATCCACCATCCCTCATGGTTCTAAATCTACATAG 1809 0.4461 MSIWVRLSACMCLTFELLCFFLFYELLFPLWEMSPERLMTNWVGSENDAKPAMVCTANDLQSWKDFPKGLRVLLLDGDTNSAADLRSKLEAMGYIVSIFCNENEALSAISSKPEGFHVAIVEVRTSSNQGCFKFLENAKDLPTIMTSNDLCLSSMMKCIALGAVEFLRKPLSEEKLRNIWQHVVHKAFNAGATVLPESLKPVKESVVSMLQLQTDNKEQQSKISIDIEKVSRFSENDHELSSGSDNKYPAPSTPQLKQGARLLDDGDCHEQSHCLTEKESGELGGETISVETTCGNSNSEGATPQPSKPETTEIKKEEDFANGSKSESDVSTHSHDGNFVSSNGDSTPSPKKVRALSDACEITANRKKSKKMKVDWTPELHNKFVQAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMHKRHILPKEEDRRWPSQRDMMQRSYYVPRPIMAYPPYHSNHTLSPAPMYPMWGQPGSQPAGAQMWGPPNYHLWQPFPGMHAEAWGCPVLPPSQNPCISHIQHMPVLHRANNIEYNSSMPPSSLEHHPADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQSISTIPHGSKST 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0432 602 SUPERFAMILY CheY-like 68 186 IPR011006 -
Lele49g0432 602 Pfam Myb-like DNA-binding domain 374 423 IPR001005 -
Lele49g0432 602 MobiDBLite consensus disorder prediction 274 354 - -
Lele49g0432 602 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 368 427 IPR017930 -
Lele49g0432 602 MobiDBLite consensus disorder prediction 286 309 - -
Lele49g0432 602 Gene3D - 70 192 - -
Lele49g0432 602 Gene3D - 367 429 - -
Lele49g0432 602 MobiDBLite consensus disorder prediction 333 350 - -
Lele49g0432 602 FunFam Two-component response regulator 367 430 - -
Lele49g0432 602 SUPERFAMILY Homeodomain-like 370 428 IPR009057 -
Lele49g0432 602 PANTHER TRANSCRIPTION ACTIVATOR GLK1 53 597 IPR044825 GO:0003700|GO:0045893
Lele49g0432 602 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 371 426 IPR006447 GO:0003677
Lele49g0432 602 MobiDBLite consensus disorder prediction 310 332 - -
Lele49g0432 602 FunFam Two-component response regulator-like APRR2 69 195 - -
Lele49g0432 602 ProSiteProfiles Response regulatory domain profile. 71 184 IPR001789 GO:0000160
Lele49g0432 602 MobiDBLite consensus disorder prediction 234 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0432 Lele-ChrLele49 2531245 2536337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0432 53 599 Response Regulator Gene Family AT4G18020 47.350 2.06e-139 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele49g0432 Myb_DNA-binding 6.5e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0432 49 2531245 2536337 Lele53g0277 53 2276494 2281242 CCT
Lele49g0432 49 2531245 2536337 Lele54g0276 54 2317141 2321343 CCT
Lele49g0432 49 2531245 2536337 Lele55g1213 55 18760328 18765650 CCT
Lele49g0432 49 2531245 2536337 Lele56g1162 56 15081953 15086214 CCT
Lele49g0432 49 2531245 2536337 Lele51g0444 51 2579970 2584987 hybridization
Lele49g0432 49 2531245 2536337 Lele52g0459 52 2738437 2744131 hybridization