Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0416 ATGGGTTGCACTGGAATTGAAAAACACACCCGAGCAAATCGAAAATCTCAATCGGTCAATCCAGGTAACTGCTGTCTTCACCGATTTTCAATTTCCAAATCTATCATGGAGTCCGGCGTCAAGCCGCAGAAATACCTTCTGGGTCTCGACGATTCGACCCAAAGCCCGAATCCTGATTCACACCCTAACATCAAACCTACCCCTAATGGCGAGGAATGTGGCTGGGGTTACTGCACGGAAGAACACTTGGAAGAAATTCTAATGAAAAACTTGGAGTGTTTATACAATGAAGCTATATCAAAGCTTGTTACGTTGGGGTATAACGAGGACACTGCTTTAAAAGCAGTGTTGCGAAACGGGCACTGTTATCATGGTGGGACGGATTTGCTGACAAATATATTGCAAAACTCATTGGCTTATTTAAATAGTAATAGTGGTGGTGATAATGCATGTAAATGCAATTTGGATGGGTCAGAGCCTGTCTTCTCAGACTTGAGGGAGTTGGAGGAGTACTCTCTAGCAGTTATGGTCTGTCTCTTGCAGCATTTAAGGCCGCATTTGAGTAAAGGTGATGCCATGTGGTGTTTACTTATGAGTGATCTTCATGTAGGAAAGGCAAACAAAATGGAAATCCCCGTGCTTCCTGAGCCAGGCGATGGTAATCCTGCTTGTTCTACAGTTGAAACTGTTAAAAATTCAGTAGGTGTGATCACCCCTTCTCTTTGTAGGCTTCATGGGAGTTGGGCATTTGCAAATAGCGGAGACTCAGATTTCCCTGCCAATGAATTATTTTCTTGCGTTGCAGACATGACTTTACAAAGAGATATTGAATTCCCAAAGCATTTTAATCTCTCTCCTTCTATGAAGTCATTGTTGAAAAGAAATGTGGCAGTGTTTGCTGCTGGTTTAAGGGCAAACTCAAAACAATTGCAGACAAAATCAAAAGCACGTCCTGGCAGTAGTTCTTCATCTAGTTTGGATTCTCCTCCTATACTGGGGACTAAACCTCCAGTTGAGAAGTCAGGGGATTCTCATAATCAAAATAATCAACATGCTGTGAATTCAGTTCTTAGTAGATTTAGTGATCTAAATTTTGATGAGAATTTGGAGTCTCTGGCTGAAGATCAGATGGAAGAGGTGACTTCCACTATACGTCATCAGATTAATGATCTTGAGAAACAGGTACAGGAGCGAAAAGATTGGGCTCATCGGAAGGCAATGCAAGCTGCAAGAAAGCTAAGCAGTGATCTGACTGAGCTGAAAATGCTAAGGATGGAAAGAGAAGAGGCTCAGAGATTGAAGGAAGGGAAACAGGTCCTTGAGGACACCACTATGAAAAGACTTTCAGAGATGGAGATTGCACTGAGAAAGGCTAGCAGTCAAGTGGACCGTGCCAATGCAGTAGTGAGGAGACTTGAAACTGAAAAATCAGAGATCAAAGCAGAGATGGAGGCTTCTAAATTGAGTGCTTCAGAGTCAGTCTCAGTTTGTTTGCAAGTTGCAAAAAGAGAGAAAAAGTGCTTGAAGAGGCTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGGAGGAGATTTCAGATGAGAAAGATAAGCTACTGGAGATGCAAAGAATGGTGGGTCGGATTAAACAATGTCAGAGAGAAGCTGAGATCAAGTGGAGGGAGGAGTTGAGGGCTAAAGAGGAATCCTCAACACTGTTAAAGGAGGAAAAGAGGTTGAAGGAAGAAGTAGAGGCTAATAATAAGAGGAAGCTTGAGGCTTTGCGGTTGAAGGTAGATATAGATTTCCAGCGCCACAAGGATGATTTCCTCAGACTTGAACAGGAACTCTCACGTCTTAAAGCATCTGATCATCACCAATCAAATAGTTCATCTGCGGCTGAGTATGAGGATCCAAAGCCCCAAAGAGAGACAATTGCTAATCTGCTTCAAGAATTAGATGAATTGGAGGAAATTTCCAAGAAAGAAGACAACTTTGATAGGGAATGCATTATATGTAGGAAAGATGAAGTATCTGTTGTATTCTTGCCGTGTGCACATCAAGTTATGTGCGGAAGGTGCAGTGATGAGTATGGGAGAAGTGACAATGCTGTTTGTCCTTGCTGCTCGGTTTCAATCGAACAGATGATCCGTGTATTTGGGCCAACTTCTTAG 2154 0.4253 MGCTGIEKHTRANRKSQSVNPGNCCLHRFSISKSIMESGVKPQKYLLGLDDSTQSPNPDSHPNIKPTPNGEECGWGYCTEEHLEEILMKNLECLYNEAISKLVTLGYNEDTALKAVLRNGHCYHGGTDLLTNILQNSLAYLNSNSGGDNACKCNLDGSEPVFSDLRELEEYSLAVMVCLLQHLRPHLSKGDAMWCLLMSDLHVGKANKMEIPVLPEPGDGNPACSTVETVKNSVGVITPSLCRLHGSWAFANSGDSDFPANELFSCVADMTLQRDIEFPKHFNLSPSMKSLLKRNVAVFAAGLRANSKQLQTKSKARPGSSSSSSLDSPPILGTKPPVEKSGDSHNQNNQHAVNSVLSRFSDLNFDENLESLAEDQMEEVTSTIRHQINDLEKQVQERKDWAHRKAMQAARKLSSDLTELKMLRMEREEAQRLKEGKQVLEDTTMKRLSEMEIALRKASSQVDRANAVVRRLETEKSEIKAEMEASKLSASESVSVCLQVAKREKKCLKRLLAWEKQKAKLQEEISDEKDKLLEMQRMVGRIKQCQREAEIKWREELRAKEESSTLLKEEKRLKEEVEANNKRKLEALRLKVDIDFQRHKDDFLRLEQELSRLKASDHHQSNSSSAAEYEDPKPQRETIANLLQELDELEEISKKEDNFDRECIICRKDEVSVVFLPCAHQVMCGRCSDEYGRSDNAVCPCCSVSIEQMIRVFGPTS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0416 717 Pfam Family of unknown function (DUF6592) 90 208 IPR046527 -
Lele49g0416 717 Coils Coil 560 587 - -
Lele49g0416 717 Coils Coil 504 538 - -
Lele49g0416 717 MobiDBLite consensus disorder prediction 308 330 - -
Lele49g0416 717 Coils Coil 596 616 - -
Lele49g0416 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 714 IPR013083 -
Lele49g0416 717 ProSiteProfiles Zinc finger RING-type profile. 663 703 IPR001841 -
Lele49g0416 717 MobiDBLite consensus disorder prediction 308 349 - -
Lele49g0416 717 Pfam Zinc finger, C3HC4 type (RING finger) 660 708 - -
Lele49g0416 717 Coils Coil 448 489 - -
Lele49g0416 717 SUPERFAMILY RING/U-box 644 709 - -
Lele49g0416 717 MobiDBLite consensus disorder prediction 47 68 - -
Lele49g0416 717 MobiDBLite consensus disorder prediction 614 634 - -
Lele49g0416 717 PANTHER OS05G0141500 PROTEIN 1 712 IPR046934 -
Lele49g0416 717 Coils Coil 423 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0416 Lele-ChrLele49 2415567 2418667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0416 637 713 C3H Transcription Factor Family AT1G73950 34.524 7.24e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0416 49 2415567 2418667 Lele53g0258 53 2144646 2149042 CCT
Lele49g0416 49 2415567 2418667 Lele54g0262 54 2214082 2218513 CCT
Lele49g0416 49 2415567 2418667 Lele56g1174 56 15207853 15208398 CCT
Lele53g0264 53 2180479 2184092 Lele49g0416 49 2415567 2418667 CCT
Lele54g0267 54 2251463 2254345 Lele49g0416 49 2415567 2418667 CCT
Lele55g1223 55 18820784 18824421 Lele49g0416 49 2415567 2418667 CCT
Lele56g1170 56 15172523 15185089 Lele49g0416 49 2415567 2418667 CCT
Lele49g0416 49 2415567 2418667 Lele51g0427 51 2462470 2467478 hybridization
Lele49g0416 49 2415567 2418667 Lele52g0443 52 2622005 2625353 hybridization