Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0411 ATGGATTCTCGGGAGCCACCCCAGCATTCGCCAGCGCCACCGCCACGCTCACAACCGCAACACTCATCAGCGCCACCAAACATTATGATACCCCCTGGTTCTTTTTCCTCCACCGTTCCCAACCCAGCCCATTCTTCCTTGATGAACCCCAATTCCTCGTCCATGCTGATGGCCCCTGCTACCGCCCGATTCCCCTTCCCCCCATTTGTATCACAATCCCGTTCTCCTCCTCCTCCTCCTCCCCATCCTCCCCCTCCATCGAAGCCTTCCGAACCTTTAAGAAACACTTCTCCTTATGAAGGCTCCTCCTCTGTGTTGAGGCCCTGCGGCTTGAGTATTGATTCTCCGAAGAAGAAGAGAGGCCGGCCCAGGAAGTATTCGCCTGATGGCAGCATTGCTCTGGGTTTGATTCCTACACCTTTGTCTTCTTCTGCCCCCGCTTATTTGAGTGGCACGTCCGGTGAACCACCAGCTAAAAAGAGCAGGGGAAGGCCGCCGGGCTCTGGAAAGAAGCAACTGGATTCTCTTGGAGTTGGCGGGACATGCTTTACTCCACATGTTGTCTTGATGAAAACTGGGGAGGACATTGCAGCAAAGCTTATGTCATTTTGTGAAGAAGGGTCACGTTCAGTCTGTATTCTTTCTGCTAATGGTGCAGTCTGCAATGCCACCCTTCGACAGCCAGCTACATCTGGTGGTACAGTGTACTATGAGGGTCGATATGAGATTATATCTTTATCAGGTTCTTTCAATCAATCTGAAGACGGTAGTTGTAGAGCAGGTGGGTTGAGTGCCACTCTCGCGGGGACTGATGGAAAAATTGTGGGTGGTAGCGTTTCTGGAATGCTAGTTGCAGCATCGCCAATACAGGTCATTGTGGGTAGCTTCATTGTGGACGGGAAGAAAAAGTCGAGCTCAAAGGAGAAACCTGGGCCCTCCTTGGCAGCAACGCCCCCGGGAACTCAAGTGTTGAATTTTGGTGCATCGCCTGTGACTCCAACCAATGCTACCTCTCAAGGGGGTTCAAGGGATTCTTCTGATGACGATGAAGTTGGGTCTGGATCAGGGTCTGGGACTGGGTCTGGGACCGGAGCTGGGACTGGGGCTGCAATCCACAGTAGTGTTAGCCAGCCCATTCATAATATGCCATGGCATCATCAACTATGGCCTCCGCAGCGATGA 1182 0.5254 MDSREPPQHSPAPPPRSQPQHSSAPPNIMIPPGSFSSTVPNPAHSSLMNPNSSSMLMAPATARFPFPPFVSQSRSPPPPPPHPPPPSKPSEPLRNTSPYEGSSSVLRPCGLSIDSPKKKRGRPRKYSPDGSIALGLIPTPLSSSAPAYLSGTSGEPPAKKSRGRPPGSGKKQLDSLGVGGTCFTPHVVLMKTGEDIAAKLMSFCEEGSRSVCILSANGAVCNATLRQPATSGGTVYYEGRYEIISLSGSFNQSEDGSCRAGGLSATLAGTDGKIVGGSVSGMLVAASPIQVIVGSFIVDGKKKSSSKEKPGPSLAATPPGTQVLNFGASPVTPTNATSQGGSRDSSDDDEVGSGSGSGTGSGTGAGTGAAIHSSVSQPIHNMPWHHQLWPPQR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0411 393 Gene3D - 185 309 - -
Lele49g0411 393 MobiDBLite consensus disorder prediction 318 342 - -
Lele49g0411 393 Pfam Plants and Prokaryotes Conserved (PCC) domain 185 296 IPR005175 -
Lele49g0411 393 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 77 346 IPR039605 GO:0003680
Lele49g0411 393 MobiDBLite consensus disorder prediction 70 92 - -
Lele49g0411 393 SUPERFAMILY AF0104/ALDC/Ptd012-like 182 297 - -
Lele49g0411 393 MobiDBLite consensus disorder prediction 22 58 - -
Lele49g0411 393 SMART AT_hook_2 159 171 IPR017956 GO:0003677
Lele49g0411 393 SMART AT_hook_2 117 129 IPR017956 GO:0003677
Lele49g0411 393 MobiDBLite consensus disorder prediction 302 393 - -
Lele49g0411 393 MobiDBLite consensus disorder prediction 351 381 - -
Lele49g0411 393 MobiDBLite consensus disorder prediction 1 176 - -
Lele49g0411 393 CDD DUF296 184 296 IPR005175 -
Lele49g0411 393 ProSiteProfiles PPC domain profile profile. 180 317 IPR005175 -
Lele49g0411 393 MobiDBLite consensus disorder prediction 7 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0411 Lele-ChrLele49 2394205 2397828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0411 110 327 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 52.016 4.00e-66 215