Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0408 ATGTCTGTAACACAAACCATAGCTCCTCCAGAGATTGTTGCCCTTGCGTCGTCGTCGTCTTCTTCGCCCATGACCCAAGACCCTCCAAATCACCCGACAAATTCTAACGCTTTGATGTCGTGGAACCCTGAGGAAGATGACTCATGGGAGGTCAGAGCTTTTGCAGAAGATACACGAAATGTCATGGGCACCACTTGGCCTCCCAGGTCCTACACCTGCACTTTCTGCAGAAGGGAGTTCCGTTCCGCCCAAGCTCTCGGCGGTCACATGAACGTCCACCGCCGTGACCGGGCTCGCCTCCACCAACTCCACCCCAACTCTAATTCCTTCATAATCCCATCACCACAAGACCTTGTTCCTAGTAATGGATTGTGCTTTCTCTATCGTTTACCACCTGCCCCTAATAATCCCACCTTTGCCTTCGCTAACAGTGCTGCTCCTACTGTCACCGGTCCGAATGCATGTGGAGAATCAACTTCCACGATTCTCTCCGTCTCTCCTTATCCGGCAAACGAGTTAGATTTTAATTCGGTGCTACGATCTGGCTGTAATATTTCGTCTTACTCTAGTAACTCCACCAAAGTGGAACTGCCCACCACCAACTCCTCCAATGATGGGCACGAAGAGCTTGATCTTGAGCTCCGGCTAGGCCACAGGCCAACGCCGACCTGA 672 0.5179 MSVTQTIAPPEIVALASSSSSSPMTQDPPNHPTNSNALMSWNPEEDDSWEVRAFAEDTRNVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQLHPNSNSFIIPSPQDLVPSNGLCFLYRLPPAPNNPTFAFANSAAPTVTGPNACGESTSTILSVSPYPANELDFNSVLRSGCNISSYSSNSTKVELPTTNSSNDGHEELDLELRLGHRPTPT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0408 223 PANTHER OS07G0101800 PROTEIN 44 220 - -
Lele49g0408 223 SUPERFAMILY beta-beta-alpha zinc fingers 68 98 IPR036236 -
Lele49g0408 223 Gene3D Classic Zinc Finger 61 110 - -
Lele49g0408 223 MobiDBLite consensus disorder prediction 16 35 - -
Lele49g0408 223 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lele49g0408 223 MobiDBLite consensus disorder prediction 189 205 - -
Lele49g0408 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Lele49g0408 223 SMART c2h2final6 71 93 IPR013087 -
Lele49g0408 223 MobiDBLite consensus disorder prediction 189 211 - -
Lele49g0408 223 Pfam C2H2-type zinc finger 71 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0408 Lele-ChrLele49 2364700 2365371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0408 34 220 C2H2 Transcription Factor Family AT4G17810 40.909 2.53e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele49g0408 zf-C2H2_6 4.5e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0408 49 2364700 2365371 Lele49g0408 49 2364700 2365371 ECH
Lele49g0408 49 2364700 2365371 Lele51g0417 51 2404795 2405457 hybridization
Lele49g0408 49 2364700 2365371 Lele52g0435 52 2568604 2569266 hybridization