Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0403 ATGGAGATTTCATCCAAATACTTCACCGAGCTGGATCCGAGCATGTTCGAGCAGTACCCGGTGGATTGTTTGGGGTACGAGGTTGATGACTTTCAGGATTTGTCCGAATACGGCGACAGTTACTCATGTTTCGACTCCAAACGAAGCCGTGACGACTGGTTCCCAGTGGAGAGTCCAGAATCTGTTGCCCAACAGAGACAAACCAAGCAACCCAAGAGCACCAACAACACTAGCTGGACCTCTTGCACCACTACAGCAATGGCTGACTCCATCATCCCTTCCAACCTTTCTACTTCGAATTCCACCTCCCAAATCATTTCTTTTGACAACTCTAATTCTTCCCCAGACGTCGCTTCTCACCAATTTTACAGCTTGGATTCTAGTACTCTTGTCAAGCCTAAAACCGAGACTACTTTCGCTTCTGACAACTTGGATTTCCGTGTTCCCTTCTCCATTTCTCAACTCACCTATGACAGCAAAACTGATTCTTTTTTTCTCCCACATGGAAAGAAAACCGCCACCAGTACCAGAAATCACATCCAAGCTCAAGATCACGTTATGGCCGAAAGAAAACGAAGGGAGAAGCTCACCCAGAGGTTTATTGCTCTTTCCGCCATTCTTCCCGGACTCAAAAAGATGGATAAGGCTTCAGTACTAGGAGATGCTATACACTATGTGAAACAACTGCAGGAGCGCGTGAAAAATCTGGAGGAGCAGATAAACAAGAAAGCATTGGAATCCGCAGTGTTTGTGAACAGGTCTGTTCTCTATGCCGACGATGATGGCTCCTCCTCCGATAAAAATTCCAACAGCCGTTCTGACCAGCCACTGCCGGAAATCGAAGCAAGAGTTTCAGGCAAGGAGAGTATTAGCAGCTTCTTGCCCTTCGGGGATACCACTCTTGATATTACTATTGTTGCTCAGATGAACAAGGAAGACTGCGTGACAGCAAAAGATATAATAAGAAGCCTGAGGCAGGGTCTGAGGCACTTAAATCGATGA 1002 0.4641 MEISSKYFTELDPSMFEQYPVDCLGYEVDDFQDLSEYGDSYSCFDSKRSRDDWFPVESPESVAQQRQTKQPKSTNNTSWTSCTTTAMADSIIPSNLSTSNSTSQIISFDNSNSSPDVASHQFYSLDSSTLVKPKTETTFASDNLDFRVPFSISQLTYDSKTDSFFLPHGKKTATSTRNHIQAQDHVMAERKRREKLTQRFIALSAILPGLKKMDKASVLGDAIHYVKQLQERVKNLEEQINKKALESAVFVNRSVLYADDDGSSSDKNSNSRSDQPLPEIEARVSGKESISSFLPFGDTTLDITIVAQMNKEDCVTAKDIIRSLRQGLRHLNR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0403 333 MobiDBLite consensus disorder prediction 57 79 - -
Lele49g0403 333 SMART finulus 186 235 IPR011598 GO:0046983
Lele49g0403 333 MobiDBLite consensus disorder prediction 260 276 - -
Lele49g0403 333 MobiDBLite consensus disorder prediction 60 79 - -
Lele49g0403 333 CDD bHLH_AtNAI1_like 182 254 - -
Lele49g0403 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 229 IPR011598 GO:0046983
Lele49g0403 333 MobiDBLite consensus disorder prediction 260 280 - -
Lele49g0403 333 Pfam Helix-loop-helix DNA-binding domain 183 230 IPR011598 GO:0046983
Lele49g0403 333 Coils Coil 219 246 - -
Lele49g0403 333 Gene3D - 172 245 IPR036638 GO:0046983
Lele49g0403 333 PANTHER BHLH TRANSCRIPTION FACTOR 291 328 - -
Lele49g0403 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 247 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0403 Lele-ChrLele49 2338478 2339860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0403 100 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.147 6.45e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele49g0403 HLH 9.4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0403 49 2338478 2339860 Lele53g0246 53 2041857 2043369 CCT
Lele49g0403 49 2338478 2339860 Lele54g0250 54 2103808 2105318 CCT
Lele49g0403 49 2338478 2339860 Lele55g1240 55 18966698 18972195 CCT
Lele49g0403 49 2338478 2339860 Lele56g1188 56 15336524 15341891 CCT
Lele49g0403 49 2338478 2339860 Lele51g0412 51 2379193 2380656 hybridization
Lele49g0403 49 2338478 2339860 Lele52g0429 52 2524146 2527913 hybridization