LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0362	ATGGGGGCTCCAAAGCAAAAATGGACTGCTGAAGAAGAAGCGGCACTGAAAGCTGGAGTAATGAAACATGGGGCAGGAAAGTGGCGCACTATACTTACAGACCCAGAGTTCAGTGCTATTTTGCGCATGCGTTCAAATGTAGATCTAAAGGATAAATGGAGGAATATAAATGTTACTGCAATATGGGGATCCAGACAGAAGGCAAAACTTGCTCTTAAAAGGAACCTACCAGCCCCAAATAATGATAACAACCATATGGCCTTGAGTACTGCTGTTCAACATGGTGAAGAAGTTCATGATACTAAGTCTCTAGCAATTGCTGGCGGAATGTCACAGTCTGCTAATCCAAAAGAACAAATATCCAGCATGGAAAAGATGCATGAAAAGATATTGTTATATAAGCTATGTTGGGAAAAGAGAAGGGGAAAAAATGGAAAGCAAGAAAACTTCATGCTACTTTCATGGTTGGATAAGCTTATATTAGAGGCTATTGTCAATTTGAAGGAGCCAAAGGGTACTGACAGGGCTGCTATTGCTGCTTACATAGAGTGTCTCTTTGAAAGTGGTTTTGATCAATTTTCATCTCTACAGGAGCATTACTGTTCTCCACCGAACCTCAGAAAGTTATTATCAACGAAACTGAAGCATATGGTGGCTAGTGGCAAATTGATTAAGATAAAACACAAGTACAGGATGACTCCAAGTTCTGCAATCACTGAAAAAAGAAGACACTCTAATTTGTTACTCCTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCGGAGAAGACCAATGTCAACATCCTTTTAAAATCCCAAATTGACGCAGAGCTATCAAAAATGAAGGGCGTGACAGCCCAAGAAGCTGCTACAGCTGCTGCAAAGGCAGTTGCGGAAGCAGAAGCTGCAATTTCTGAGGCAGAGGCAGCAGCTAGGGAGGCAGAAGCTGCAGAAGCTGAAGCTGAGGCCGCAGAAGTGTTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAGAACACTGCAAATTTGGTAG	1029	0.4237	MGAPKQKWTAEEEAALKAGVMKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPNNDNNHMALSTAVQHGEEVHDTKSLAIAGGMSQSANPKEQISSMEKMHEKILLYKLCWEKRRGKNGKQENFMLLSWLDKLILEAIVNLKEPKGTDRAAIAAYIECLFESGFDQFSSLQEHYCSPPNLRKLLSTKLKHMVASGKLIKIKHKYRMTPSSAITEKRRHSNLLLLEGRPKDSPKAEKTNVNILLKSQIDAELSKMKGVTAQEAATAAAKAVAEAEAAISEAEAAAREAEAAEAEAEAAEVFAKAAMKALKCRTLQIW	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0362	342	CDD	SANT_TRF	6	57	-	-
	Lele49g0362	342	PANTHER	SINGLE MYB HISTONE 4	1	337	IPR044597	GO:0003691
	Lele49g0362	342	Gene3D	-	2	59	-	-
	Lele49g0362	342	Pfam	Myb-like DNA-binding domain	5	56	IPR001005	-
	Lele49g0362	342	FunFam	Telomere repeat-binding factor 1	2	58	-	-
	Lele49g0362	342	ProSiteProfiles	Myb-like domain profile.	5	57	IPR001005	-
	Lele49g0362	342	Coils	Coil	289	326	-	-
	Lele49g0362	342	SMART	h15plus2	156	229	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lele49g0362	342	SUPERFAMILY	Homeodomain-like	2	66	IPR009057	-
	Lele49g0362	342	SMART	sant	4	59	IPR001005	-
	Lele49g0362	342	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	61	IPR017930	-
	Lele49g0362	342	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	151	234	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lele49g0362	342	Gene3D	-	155	247	IPR036388	-
	Lele49g0362	342	Pfam	linker histone H1 and H5 family	158	227	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lele49g0362	342	SUPERFAMILY	"Winged helix" DNA-binding domain	156	243	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0362	Lele-ChrLele49	2135313	2138172	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g0362	1	337	Single Myb Histone (SMH) Gene Family	AT5G67580	49.408	2.98e-76	234

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Lele49g0362		Linker_histone	8.8e-07	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele53g0208	53	1715498	1716013	Lele49g0362	49	2135313	2138172	CCT
	Lele54g0212	54	1793755	1795717	Lele49g0362	49	2135313	2138172	CCT
	Lele55g1279	55	19282303	19284784	Lele49g0362	49	2135313	2138172	CCT
	Lele56g1226	56	15644506	15646465	Lele49g0362	49	2135313	2138172	CCT
	Lele49g0362	49	2135313	2138172	Lele51g0376	51	2162644	2165519	hybridization
	Lele49g0362	49	2135313	2138172	Lele52g0391	52	2294682	2297782	hybridization